View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13197_high_5 (Length: 329)
Name: NF13197_high_5
Description: NF13197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13197_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 50821624 - 50821922
Alignment:
| Q |
14 |
aaataacaacaacaacatctataactaccacaaaaaggataacaggaaaatagagagtgaaataacaggaaactagcacaatatccaaagcctagacaac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50821624 |
aaataacaacaacaacatctataactaccacaaaaaggataacaggaaaatagagagtgaaataacaggaaactagcacaatatccaaagcctagacaac |
50821723 |
T |
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| Q |
114 |
tagagcaatatcagtagcattatcatttctaccctttttaacaaaaactgtaaactgaatcctaaacgtcatcatcatattcactgctcagtgttttgag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50821724 |
tagagcaatatcagtagcattatcatttctaccctttttaacaaaaactgtaaactgaatcctaaacgtcatcatcatattcactgctcagtgttttgag |
50821823 |
T |
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| Q |
214 |
acacaatgtggttctatcaaaattctctatgatgtcaaggttgttaccttggagaagaaaattcagatcatcatcttgtattggcttgaacccaaaatg |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50821824 |
acacaatgtgtttctatcaaaattctctatgatgtcaaggttgttaccttggagaagaaaattcagatcatcatcttgtattggctagaacccaaaatg |
50821922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 50854237 - 50853939
Alignment:
| Q |
14 |
aaataacaacaacaacatctataactaccacaaaaaggataacaggaaaatagagagtgaaataacaggaaactagcacaatatccaaagcctagacaac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50854237 |
aaataacaacaacaacatctataactaccacaaaaaggataacaggaaaatagagagtgaaataacaggaaactagcacaatatccaaagcctagacaac |
50854138 |
T |
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| Q |
114 |
tagagcaatatcagtagcattatcatttctaccctttttaacaaaaactgtaaactgaatcctaaacgtcatcatcatattcactgctcagtgttttgag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50854137 |
tagagcaatatcagtagcattatcatttctaccctttttaacaaaaactgtaaactgaatcctaaacgtcatcatcatattcactgctcagtgttttgag |
50854038 |
T |
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| Q |
214 |
acacaatgtggttctatcaaaattctctatgatgtcaaggttgttaccttggagaagaaaattcagatcatcatcttgtattggcttgaacccaaaatg |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50854037 |
acacaatgtgtttctatcaaaattctctatgatgtcaaggttgttaccttggagaagaaaattcagatcatcatcttgtattggctagaacccaaaatg |
50853939 |
T |
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