View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13197_low_5 (Length: 338)
Name: NF13197_low_5
Description: NF13197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13197_low_5 |
 | |
|
| [»] scaffold1526 (1 HSPs) |
| | |
|
| [»] scaffold0642 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 27539253 - 27539167
Alignment:
| Q |
19 |
cagatatgtgtggactcgaattgaattgtttgtttaggacaaaaatatctatattgatgtgtgtagatctattttgctttcaattga |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27539253 |
cagatatgtgtggactcgaattgaattgtttgtttaggacaaaaatatctatattgatgtgtgtagatctattttgctttcaattga |
27539167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 218 - 296
Target Start/End: Complemental strand, 27539055 - 27538977
Alignment:
| Q |
218 |
gctagatatatattttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac |
296 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27539055 |
gctagatatatactttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac |
27538977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 44496710 - 44496774
Alignment:
| Q |
231 |
tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac |
296 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44496710 |
tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac |
44496774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 15654291 - 15654244
Alignment:
| Q |
291 |
tttaacattccaagaagtcgacatgggtttgattttgttgcttttctt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15654291 |
tttaacattccaagaagtcgacatgggtttgattttgttgcttttctt |
15654244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 15642965 - 15642918
Alignment:
| Q |
291 |
tttaacattccaagaagtcgacatgggtttgattttgttgcttttctt |
338 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
15642965 |
tttaacattccaagaaatcgacatgggtctgattttgttgcttttctt |
15642918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 27536434 - 27536387
Alignment:
| Q |
291 |
tttaacattccaagaagtcgacatgggtttgattttgttgcttttctt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
27536434 |
tttaacattccaagaagtcgacatgggtctgattttgttgcatttctt |
27536387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 68 - 4
Alignment:
| Q |
231 |
tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac |
296 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
68 |
tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac |
4 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 5224 - 5288
Alignment:
| Q |
231 |
tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac |
296 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5224 |
tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac |
5288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 15137 - 15201
Alignment:
| Q |
231 |
tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac |
296 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15137 |
tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac |
15201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 23844 - 23780
Alignment:
| Q |
231 |
tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac |
296 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23844 |
tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac |
23780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 52752 - 52688
Alignment:
| Q |
231 |
tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac |
296 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52752 |
tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac |
52688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 3379444 - 3379508
Alignment:
| Q |
231 |
tttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac |
296 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3379444 |
tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac |
3379508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 22003630 - 22003583
Alignment:
| Q |
291 |
tttaacattccaagaagtcgacatgggtttgattttgttgcttttctt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22003630 |
tttaacattccaagaagtcgacatgggtctgattttgttgcttttctt |
22003583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 1098335 - 1098386
Alignment:
| Q |
234 |
caaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaa |
285 |
Q |
| |
|
||||||||||| |||||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
1098335 |
caaatgtggctcctaaagtgattcatgaaacatgaaaaacaatgttatgtaa |
1098386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 15707615 - 15707659
Alignment:
| Q |
251 |
gtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaac |
296 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15707615 |
gtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaac |
15707659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University