View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13197_low_7 (Length: 314)

Name: NF13197_low_7
Description: NF13197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13197_low_7
NF13197_low_7
[»] chr8 (1 HSPs)
chr8 (8-298)||(31688269-31688559)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 31688559 - 31688269
Alignment:
Q  8 cgaagaaaataggacaatttgctgaaacttagtgcaacaatggcttatttgagtttcttctttgacggcatcaatgagctttgagaaacctcggaggctt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31688559 cgaaaaaaataggacaatttgctgaaacttagtgcaacaatggcttatttgagtttcttctttgacggcatcaatgagctttgagaaacctcggaggctt 31688460  T
Q  108 ccttgtattgaatatcattagataaatttgataaactattacaataatctacttcaatggctccataagtaaataaaattgtaaatatcctacatcactc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31688459 ccttgtattgaatatcattagataaatttgataaactattacaataatctacttcaatggctccataagtaaataaaattgtaaatatcctacatcactc 31688360  T
Q  208 caacaaacaatcagaagcacatttatccaaattaaatttaaaatacgttaaaatatatcaataagttaaatattgaattcactctattaag 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31688359 caacaaacaatcagaagcacatttatccaaattaaatttaaaatacgttaaaatatatcaataagttaaatattgaattcactctattaag 31688269  T

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