View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13197_low_8 (Length: 278)
Name: NF13197_low_8
Description: NF13197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13197_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 36768973 - 36768715
Alignment:
| Q |
1 |
acattttcaagaaaatattggattatataatggttaaattaaaacgtgggttagtatgcatttgtaacttaattcagtaattgcatttagtgcaggaatt |
100 |
Q |
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| T |
36768973 |
acattttcaagaaaatattggattatataatg-----attaaaacgtggattagtatacatttgtaacttaattcattaattgcatttagtgtaggaatt |
36768879 |
T |
|
| Q |
101 |
ttcgtaaaacaatatgcttacctcccccgcacctgccaaataaaagggaaatgattacgaaactattcataacactgtattcacaagttcacaagctcac |
200 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |
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| T |
36768878 |
ttcgtaaaacaatatgcttacttcccatgcacctgccaaataaaagggaaatgattagaaaactattcataacactgtattcacaggttcacaaactcac |
36768779 |
T |
|
| Q |
201 |
aagctcaactaacaaa----ttgaaatagataggtcggacattgtgaccagaatatgaatttcg |
260 |
Q |
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||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36768778 |
aagctcaactaactaaaatgttgaaatagataggtcggacattttgaccagaatatgaatttcg |
36768715 |
T |
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