View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13197_low_9 (Length: 252)
Name: NF13197_low_9
Description: NF13197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13197_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 55263194 - 55262968
Alignment:
| Q |
1 |
ctattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgc |
100 |
Q |
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| T |
55263194 |
ctattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgc |
55263095 |
T |
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| Q |
101 |
acaggttagttcataagttaaattatttgaccttgaagcttaaactagatttcttcgtgtttctgtaccatcgatggtaaaatatgtttcatgtgtctat |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
55263094 |
acaggttagttcataagttaaattatatgaccttgaagcttaaactagctttcttcgtgtttatgtaccattgatggtaaaatatgtttcatgtgtctat |
55262995 |
T |
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| Q |
201 |
aacagattgccattggtactgatgatg |
227 |
Q |
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| T |
55262994 |
aacagattgccattggtactgatgatg |
55262968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 55270058 - 55269832
Alignment:
| Q |
1 |
ctattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270058 |
ctattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgc |
55269959 |
T |
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| Q |
101 |
acaggttagttcataagttaaattatttgaccttgaagcttaaactagatttcttcgtgtttctgtaccatcgatggtaaaatatgtttcatgtgtctat |
200 |
Q |
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| T |
55269958 |
acaggttagttcataagttaaattatatgaccttgaagcttaaactagctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctat |
55269859 |
T |
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| Q |
201 |
aacagattgccattggtactgatgatg |
227 |
Q |
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| T |
55269858 |
gacagattgctgttggtactgatgatg |
55269832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 8301177 - 8301107
Alignment:
| Q |
41 |
tgtgttggagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagtt |
111 |
Q |
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|||||||||| |||||||||| ||||||||||| |||||| | ||||||| |||||||||||||||||||| |
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| T |
8301177 |
tgtgttggagctgacatataactatggtgtcactgaatacaccaagggaaatgcttatgcacaggttagtt |
8301107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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