View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13198_low_1 (Length: 590)
Name: NF13198_low_1
Description: NF13198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13198_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 576
Target Start/End: Original strand, 40905180 - 40905741
Alignment:
| Q |
18 |
ttgctgtacttgttggagtgccaaacaaagatgatgcctttcaaacacatcctatgaatttgttgaatgaaaggactcttaagggtacattttatggaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40905180 |
ttgctgtacttgttggagtgccaaacaaagatgatgcatttcaaacacatcctatgaatttgttgaatgaaaggactcttaagggtacattttatggaaa |
40905279 |
T |
|
| Q |
118 |
ctacaaaccccgcactgatcttcctaatgttgtagaaaagtacatgaaaggggtaagtttatatatgtacatcgaatcgtgcactgttacggaagattaa |
217 |
Q |
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| T |
40905280 |
ctacaaaccccgcactgatcttcctaatgttgtagaaaagtacatgaaaggggtacgtttatata----catcgaatcgtgcactgttacggaagattaa |
40905375 |
T |
|
| Q |
218 |
ttaatattgcagaatgatatgttatttgtgttgctaatatgatattactatgatattacaggaactggaactggagaaattcattactcacacaattcca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40905376 |
ttaatattgcagaatgatatgttatttgtgttgctaatatgatattactatgatattacaggaactggaactagagaaattcattactcacacaattcca |
40905475 |
T |
|
| Q |
318 |
ttttcagagattaacaaagcttttgattacatgctgaaaggggagtccatcagatgtatcatacgaatggaggagtaaaa---taaaacactgttgaaat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |
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| T |
40905476 |
ttttcagagattaacaaagcttttgattacatgctgaaaggggagtccatcagatgtatcatacgaatgggggagtaaaactctagaacactgttgaaat |
40905575 |
T |
|
| Q |
415 |
attcgatactagtgtggactgagttatctttctag----ttgtttatataaataaatttcataaataatccctttgggattattgagtttctgagaattt |
510 |
Q |
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| T |
40905576 |
atgccatactagtgtggactgagttatctttctagttttttatttatataaataattttcataaataatcccttttggattattgagtttgtgagaattt |
40905675 |
T |
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| Q |
511 |
gtgaagtttgcatgtaaagaattatgctgttgggattgtttaataaaagataagatagattttgat |
576 |
Q |
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| T |
40905676 |
gtgaaatttgcatgtaaagaattatgctactgggattgtctaataaaagataagctagattttgat |
40905741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 40881924 - 40882085
Alignment:
| Q |
18 |
ttgctgtacttgttggagtgccaaacaaagatgatgcctttcaaacacatcctatgaatttgttgaatgaaaggactcttaagggtacattttatggaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40881924 |
ttgctgtacttgttggagtgccaaacaaagatgatgcattcaaaactcatcctatgaatttgttgaatgaaaggactcttaagggtaccttttatggaaa |
40882023 |
T |
|
| Q |
118 |
ctacaaaccccgcactgatcttcctaatgttgtagaaaagtacatgaaaggggtaagtttat |
179 |
Q |
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| T |
40882024 |
ctacaaaccccgcaccgatcttcctaatgttgtagaaaagtacatgaaaggggtaagtttat |
40882085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 40900626 - 40900791
Alignment:
| Q |
18 |
ttgctgtacttgttggagtgccaaacaaagatgatgcctttcaaacacatcctatgaatttgttgaatgaaaggactcttaagggtacattttatggaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
40900626 |
ttgctgtacttgttggagtgccaaacaaagatgatgcatttaaaacacatcctatgaatttgttgaatgaaaggactcttaagggtaccttttatggtaa |
40900725 |
T |
|
| Q |
118 |
ctacaaaccccgcactgatcttcctaatgttgtagaaaagtacatgaaaggggtaagtttatatat |
183 |
Q |
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| T |
40900726 |
ctacaagcctcgcaccgatcttcctaatgttgtagagaagtacatgaaaggggtaagtttttatat |
40900791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 276 - 576
Target Start/End: Original strand, 40900884 - 40901183
Alignment:
| Q |
276 |
caggaactggaactggagaaattcattactcacacaattccattttcagagattaacaaagcttttgattacatgctgaaaggggagtccatcagatgta |
375 |
Q |
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||||| |||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
40900884 |
caggagctggaacttgagaaattcatcactcactcaatcccattttcagagattaacaaagcttttgattacatgctgaaaggagagtccatcagatgca |
40900983 |
T |
|
| Q |
376 |
tcatacgaatggaggagtaaaa---taaaacactgttgaaatattcgatactagtgtggactgagttatctttctagttgtttatataaataaatttcat |
472 |
Q |
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|||| ||||||||||||||||| ||||||| || || |||| || ||||| ||||| | || ||| | |||||| | | ||| ||||||||| |
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| T |
40900984 |
tcatccgaatggaggagtaaaactctaaaacaatgatgtaataatccctacta--agggactcatttctctccttggttgttgaga-aaaaaaatttcat |
40901080 |
T |
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| Q |
473 |
aaataatccctttgggattattgagtttctgagaatttgtgaagtttgcatgtaaagaattatgctgttgggattgtttaataaaagataagatagattt |
572 |
Q |
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||||||| |||| ||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||||| | ||||| |||||||| ||||||| |
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| T |
40901081 |
aaataat-tcttttggattatgaagtttgtgagaatttgtgaagtttacatgtaaagaattgtgctgttgggattctctaatacaagataagctagattt |
40901179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 276 - 397
Target Start/End: Original strand, 40882184 - 40882305
Alignment:
| Q |
276 |
caggaactggaactggagaaattcattactcacacaattccattttcagagattaacaaagcttttgattacatgctgaaaggggagtccatcagatgta |
375 |
Q |
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||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
40882184 |
caggagctggaacttgagaaattcatcactcacacaattccattttcagagattaacaaagcttttgattacatgttgaaaggagagtccatcagatgta |
40882283 |
T |
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| Q |
376 |
tcatacgaatggaggagtaaaa |
397 |
Q |
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|||| ||||||||||||||||| |
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| T |
40882284 |
tcatccgaatggaggagtaaaa |
40882305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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