View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13198_low_3 (Length: 453)
Name: NF13198_low_3
Description: NF13198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13198_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 33488719 - 33488937
Alignment:
| Q |
1 |
caggtggcctctgtcaaatctgtgtgcccaatctctttttaaacaatcatagaacttatgttcacttagtttcatatttatcctaattaagcataaggga |
100 |
Q |
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| T |
33488719 |
caggtggcctctgtcaaatctatgtgcccaatctctttctaagcaatcatagaacttatgttcaattagtttcatatttatcctaattaagcataaggga |
33488818 |
T |
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| Q |
101 |
tgggcttttcaatttttcaaactaagaaatgttgctaattagaatcaaacaatatagcagctctttgcttgtgttagtttattatgcagatttttacttt |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33488819 |
tggacttttcaatttttcaaactaagaaatgttgctaattagaatcaaacaatatagcagctctttgcttctgttagtttattatgcagatttttacttt |
33488918 |
T |
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| Q |
201 |
agctttagaaactgtgtgc |
219 |
Q |
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||||||||||||||||||| |
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| T |
33488919 |
agctttagaaactgtgtgc |
33488937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 257 - 436
Target Start/End: Original strand, 33488975 - 33489154
Alignment:
| Q |
257 |
gttcaggatttagtgttcctaattctttgtgatggtgccagctgcttgctgctccaagtctcataccatgtgttccattaattaaaagatcgttgaagtt |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33488975 |
gttcaggatttagtgttcctaattctttgtgatggtgccagctgcttgctgctccaagtctcataccatgtgttccattaattaaaagatcgttgaagtt |
33489074 |
T |
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| Q |
357 |
aaatcttgtgcctatgtctttttctaactgtctgacaaaagatgacagatacctagtatacaagttgggaggtacaagag |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33489075 |
aaatcttgtgcctatgtctttttctaactgtctgacaaaagatgacagatacctagtatacaagttgggaggtacaagag |
33489154 |
T |
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