View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13198_low_4 (Length: 210)
Name: NF13198_low_4
Description: NF13198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13198_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 28053599 - 28053524
Alignment:
| Q |
125 |
tacgctaaggagtgtaaagaaagctatgaactacaaacagcgttggcgaagaggctttctttcttatcaacctttg |
200 |
Q |
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| T |
28053599 |
tacgctaaggagtgtaaagaaagctatgaactacaaacagcgttggcgaagaggctttctttcttatcaacctttg |
28053524 |
T |
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Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28053723 - 28053675
Alignment:
| Q |
1 |
tgatgatattacaaaagaagatacgtcgtcgtttcgagtttctactaat |
49 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28053723 |
tgatgatattacaaaagaagatacgtcgtcgtttcgagtttctactaat |
28053675 |
T |
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