View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13199_high_12 (Length: 340)
Name: NF13199_high_12
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13199_high_12 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 8379962 - 8379651
Alignment:
| Q |
13 |
aagaggctagttttacatgactactatttttacttgtgggtttatacctacagcaactcaaaggaggatgcatgaaattgaaaaagatatagattcttct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8379962 |
aagaggctagttttacatgactactatttttacttgtaggtttatacctacagctactcaaaggaggatgcatgaaattgaaaaagatatagattcttct |
8379863 |
T |
|
| Q |
113 |
cttagatatataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8379862 |
cttagatatataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaa |
8379763 |
T |
|
| Q |
213 |
ttagagatcatggaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8379762 |
ttagagatcatggaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaac |
8379663 |
T |
|
| Q |
313 |
tatgcttgtttg |
324 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8379662 |
tatgcttgtttg |
8379651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 23767922 - 23768236
Alignment:
| Q |
10 |
actaagaggctagttttacatgactactatttttacttgtgggtttatacctacagcaactcaaaggaggatgcatgaaattgaaaaagatatagattct |
109 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||||| ||||| |||||||||| ||| || | ||| |||||| ||| ||| | ||||| || |
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|
| T |
23767922 |
actaagatgctagttttacatgactattctttttacttgcaggtttttacctacagctgatcatagaaagataaatgaaaatgataaacaaatagaaact |
23768021 |
T |
|
| Q |
110 |
tctcttagatatataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaag |
209 |
Q |
| |
|
|| ||| ||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||| |||||||| || |||||||| |||||| ||| |
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|
| T |
23768022 |
actattaagaatataattaacaagagggagaaagcaataaaggcaggtgaagccactgagaatgacttattaggtctcctcctagagtcgaaccacaaag |
23768121 |
T |
|
| Q |
210 |
aaattagagatcatggaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttc |
309 |
Q |
| |
|
|||||| ||| ||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||| ||||||| | | ||||||||||| ||||||| |
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|
| T |
23768122 |
aaattaaagaacatggaaacttcaagaatatgggattgagtcttgaagaagtagtcggggaatgcatgttattccatattgcagggcaagagactacttc |
23768221 |
T |
|
| Q |
310 |
aactatgcttgtttg |
324 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
23768222 |
agatttgcttgtttg |
23768236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 324
Target Start/End: Complemental strand, 23784149 - 23783835
Alignment:
| Q |
10 |
actaagaggctagttttacatgactactatttttacttgtgggtttatacctacagcaactcaaaggaggatgcatgaaattgaaaaagatatagattct |
109 |
Q |
| |
|
||||||| | |||||||||||||||| | |||||||||| ||||| ||||||| || ||| || | ||| |||||| ||||||| | ||||| || |
|
|
| T |
23784149 |
actaagatgttagttttacatgactattctttttacttgcaggtttttacctaccgctgatcatagaaagataaatgaaaatgaaaaacaaatagaaact |
23784050 |
T |
|
| Q |
110 |
tctcttagatatataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaag |
209 |
Q |
| |
|
|||||| ||||||||||||| || || |||||||| |||||||||||||| |||||||||||||| |||||||| || |||||||| |||||| || |
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|
| T |
23784049 |
actcttaagaatataattaacaagagggaaaaagcaattaaggcaggtgaagccactgagaatgacttattaggtctcctcctagagtcgaaccacagag |
23783950 |
T |
|
| Q |
210 |
aaattagagatcatggaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttc |
309 |
Q |
| |
|
|||||| ||| ||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||| ||||||| | | ||||||||||| ||||||| |
|
|
| T |
23783949 |
aaattaaagaacatggaaacgtcaagaatatgggattgagtcttgaagaagtagtcggggaatgcaggttattccatgttgcagggcaagagactacttc |
23783850 |
T |
|
| Q |
310 |
aactatgcttgtttg |
324 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
23783849 |
agatttgcttgtttg |
23783835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 120 - 300
Target Start/End: Original strand, 30468830 - 30469010
Alignment:
| Q |
120 |
atataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagaga |
219 |
Q |
| |
|
|||| |||||||| ||||| | |||| | |||||||||||||||||| || |||| ||||||||| | ||| |||||||||| ||| ||||||| ||| |
|
|
| T |
30468830 |
atatgattaacaacagagaaagagcactaaaggcaggtgaagcaactaaggatgatttgttaggtatacttttagagtcaaatcacaaagaaatggaaga |
30468929 |
T |
|
| Q |
220 |
tcatggaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaaga |
300 |
Q |
| |
|
||||| ||||| ||| || | |||||||||||||| ||||| | | |||||||||| |||||||||| ||||| ||||| |
|
|
| T |
30468930 |
acatggcaacaataaggatgtcggaatgagtcttgatgatgtgatagaggaatgcaagctattctactttgcaggccaaga |
30469010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 300
Target Start/End: Original strand, 30424731 - 30424911
Alignment:
| Q |
120 |
atataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagaga |
219 |
Q |
| |
|
|||| |||||||| ||||| | |||| | |||||||||||||| ||| || ||||||| |||||| | ||| |||||||||| ||| ||||||| ||| |
|
|
| T |
30424731 |
atatgattaacaagagagaaagagcactaaaggcaggtgaagccactaaggatgacttattaggtatacttttagagtcaaatcacaaagaaatggaaga |
30424830 |
T |
|
| Q |
220 |
tcatggaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaaga |
300 |
Q |
| |
|
|| || ||||| |||||| | |||||||||||||| |||||| | | |||||||||| | |||||||| ||||| ||||| |
|
|
| T |
30424831 |
acacggcaacaataagaatgttggaatgagtcttgatgatgtaatagaggaatgcaagctcttctactttgcaggccaaga |
30424911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 324
Target Start/End: Original strand, 30483753 - 30483957
Alignment:
| Q |
120 |
atataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagaga |
219 |
Q |
| |
|
|||| |||||||| ||||| | || ||| |||||||||||||| ||| |||||||||| |||||| ||||||| |||||||| ||| | ||||||| ||| |
|
|
| T |
30483753 |
atattattaacaagagagaaagagaaataaaggcaggtgaagccactaagaatgacttattaggtattcttcttgagtcaaatcacaaggaaattaaaga |
30483852 |
T |
|
| Q |
220 |
tcatggaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgctt |
319 |
Q |
| |
|
| | ||||| |||||| | ||||||| |||||| |||||| | |||||||||| |||||||| | |||||| ||||| | |||||| | ||||| |
|
|
| T |
30483853 |
taacaacaacaataagaatgttggaatgaatcttgatgatgtaatcaaggaatgcaagctattctaccttgcaggggaagaaaccacttcagttttgctt |
30483952 |
T |
|
| Q |
320 |
gtttg |
324 |
Q |
| |
|
||||| |
|
|
| T |
30483953 |
gtttg |
30483957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 294
Target Start/End: Original strand, 30437019 - 30437193
Alignment:
| Q |
120 |
atataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagaga |
219 |
Q |
| |
|
|||| ||||||| ||||||| |||| | | ||||||||||||||| || |||| ||||||||| | ||| |||||||||| ||| ||||||| ||| |
|
|
| T |
30437019 |
atatgattaacacgagagagagagcactaatggcaggtgaagcaacaaaggatgatttgttaggtatacttttagagtcaaatcacaaagaaatggaaga |
30437118 |
T |
|
| Q |
220 |
tcatggaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagg |
294 |
Q |
| |
|
|||| ||||| |||||| | |||||||||||||| |||||| | | |||||||||| |||||||||| ||||| |
|
|
| T |
30437119 |
acatgacaacaataagaatgttggaatgagtcttgacgatgtaatagaggaatgcaagctattctactttgcagg |
30437193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 300
Target Start/End: Original strand, 30430764 - 30430944
Alignment:
| Q |
120 |
atataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagaga |
219 |
Q |
| |
|
||||||||||||| ||||| | |||| | || |||||| |||||||| || ||||||| |||||| | ||| |||||||||| || ||||||| ||| |
|
|
| T |
30430764 |
atataattaacaagagagaaagagcactaaaagcaggtaaagcaactaaggatgacttattaggtatacttttagagtcaaatcaaaaagaaatggaaga |
30430863 |
T |
|
| Q |
220 |
tcatggaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaaga |
300 |
Q |
| |
|
|| || ||||| |||||| | |||||||||||||| |||||| | | |||||||||| | |||||||| ||||| ||||| |
|
|
| T |
30430864 |
acaaggcaacaataagaatgttggaatgagtcttgatgatgtaatagaggaatgcaagctcttctactttgcaggacaaga |
30430944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 30384430 - 30384513
Alignment:
| Q |
226 |
aaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttc |
309 |
Q |
| |
|
|||||||||| || |||||||||||||||| |||||||| | |||||||||||| ||| |||| ||||| ||||| ||||||| |
|
|
| T |
30384430 |
aaacaacaaggatgtgggaatgagtcttgatgatgtagtcgaggaatgcaagttgttccactttgcaggtcaagagactacttc |
30384513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 300
Target Start/End: Original strand, 30475792 - 30475972
Alignment:
| Q |
120 |
atataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagaga |
219 |
Q |
| |
|
|||| |||||||| ||||||| ||| | ||||| |||||||||||| || |||| || |||||| | ||| | |||| || ||| ||||||| ||| |
|
|
| T |
30475792 |
atatgattaacaagagagagatcgcactaaaggcgggtgaagcaactaaggatgatttattaggtatacttttggagttgaatcacaaagaaatggaaga |
30475891 |
T |
|
| Q |
220 |
tcatggaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaaga |
300 |
Q |
| |
|
|| | ||||| ||| || | |||||||||||||| |||||| | | ||||||||| |||||||||| ||||||||||| |
|
|
| T |
30475892 |
acacgacaacaataaggatgtcggaatgagtcttgacgatgtaatagaagaatgcaagctattctactttgcagggcaaga |
30475972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 30394880 - 30394947
Alignment:
| Q |
242 |
ggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttc |
309 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||||||| ||| | || |||||||||||| ||||||| |
|
|
| T |
30394880 |
ggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttc |
30394947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 23797099 - 23797156
Alignment:
| Q |
10 |
actaagaggctagttttacatgactact-atttttacttgtgggtttatacctacagc |
66 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||||| ||||| |||||||||| |
|
|
| T |
23797099 |
actaagatgctagttttacatgactattcttttttacttgtaggtttttacctacagc |
23797156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 324
Target Start/End: Complemental strand, 41628129 - 41627879
Alignment:
| Q |
74 |
aggaggatgcatgaaattgaaaaagatatagattcttctcttagatatataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatg |
173 |
Q |
| |
|
|||||||| ||||||||| ||||||||| | ||||| |||| |||| || |||||||| | |||| | | |||| ||||| || || | |||||| |
|
|
| T |
41628129 |
aggaggattaatgaaattgggaaagatataaaatcttcacttaaggatatgatcaacaaaagggtgaaaatattaaaggaaggtggagaaaataagaatg |
41628030 |
T |
|
| Q |
174 |
acttgttaggtcttcttctagagtcaaaccaccaagaaattagagatcatggaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatg |
273 |
Q |
| |
|
| || |||||| ||||| ||||| |||||||| | ||||||| ||| |||||||||||| |||| ||||||||| | ||||||||||| | |||||| |
|
|
| T |
41628029 |
atttattaggtattcttatagagacaaaccacaaggaaattaaagaacatggaaacaacgtgaatgtgggaatgaatattgaagatgtaattcaggaatg |
41627930 |
T |
|
| Q |
274 |
caagttattctacttggcagggcaagaatctacttcaactatgcttgtttg |
324 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||||||| | |||||||| |
|
|
| T |
41627929 |
caagttgttctactttgcagggcaagagactacttcaactttacttgtttg |
41627879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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