View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13199_high_13 (Length: 332)
Name: NF13199_high_13
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13199_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 3959260 - 3959541
Alignment:
| Q |
1 |
cagtagccgtgtccatctgtgatactgcaaccttatctgccagttgggaacatcccacatcagcctctttgtttgcttgaatgctgactaaattttgata |
100 |
Q |
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| T |
3959260 |
cagtagccgtgtccatctgtgatactgcaactttatctgccagttgggaacatcccacatcagcctctttgtttgcttgaatgctgactaaattttgata |
3959359 |
T |
|
| Q |
101 |
ctctgttgaggtgtcatctctgttattctcagtaaataaactgtcatcaataggactggagtgaggtgcagctcccttttgcagaatgaaacacaacaaa |
200 |
Q |
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| T |
3959360 |
ctctgttgaggtgtcatctctgttattatcagtaaataaactgtcatcaacaggactggagtgaggtgcagctcccttttgctgaatgagacacaacaaa |
3959459 |
T |
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| Q |
201 |
gtttaactcagaggcatggtttataatactggttgtgtctttagttccctcgttttctatgttcccattttgaggtaaactg |
282 |
Q |
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| T |
3959460 |
gtttaactcagaggcatggtttataatactggttgtgtctttagttccctccttttctatgttcccattttgaggtaaactg |
3959541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 3959779 - 3959830
Alignment:
| Q |
281 |
tggtacatatatatgccctttatcgttggtgaaacttatatagtaaatatat |
332 |
Q |
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| T |
3959779 |
tggtacatatatatgccctttatcgttggtgaaacttatatagtaaatatat |
3959830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 19167934 - 19167758
Alignment:
| Q |
4 |
tagccgtgtccatctgtgatactgcaaccttatctgccagttgggaacatcccacatcagcctctttgtttgcttgaatgctgactaaattttgatactc |
103 |
Q |
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| T |
19167934 |
tagccgtgtcaatctgtgaaactgcaactttatttgccaattgggaacatcccacatcagcctctttgtttgcctaaaggctgactaaatttagatactc |
19167835 |
T |
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| Q |
104 |
tgttgaggtgtcatctctgttattctcagtaaataaactgtcatcaataggactggagtgaggtgcagctccctttt |
180 |
Q |
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| T |
19167834 |
tgttaaactgtcatctctgttattctcagtaaataaactgtcatcaacaagattggagtgaggtgcaactccctttt |
19167758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 19167705 - 19167640
Alignment:
| Q |
218 |
ggtttataatactggttgtgtctttagttccctcgttttctatgttccc-attttgaggtaaactg |
282 |
Q |
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| T |
19167705 |
ggtttataatattggttgtgtctttagttccttccatttctttgttcccaattttgaagtaaactg |
19167640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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