View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13199_high_14 (Length: 328)

Name: NF13199_high_14
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13199_high_14
NF13199_high_14
[»] chr4 (10 HSPs)
chr4 (1-312)||(8036176-8036484)
chr4 (1-310)||(8410691-8411003)
chr4 (1-299)||(9138790-9139088)
chr4 (3-310)||(8041595-8041899)
chr4 (1-224)||(8416344-8416567)
chr4 (1-123)||(8356480-8356602)
chr4 (1-123)||(8403640-8403762)
chr4 (1-123)||(43144839-43144961)
chr4 (1-123)||(8359526-8359648)
chr4 (171-224)||(8359437-8359490)
[»] chr7 (2 HSPs)
chr7 (1-123)||(5476179-5476301)
chr7 (151-224)||(5476320-5476393)
[»] chr2 (1 HSPs)
chr2 (163-301)||(33084019-33084151)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 8036484 - 8036176
Alignment:
Q  1 agttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8036484 agttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaa 8036385  T
Q  101 acgcgtcactactctcacatatactcggtctggagatacatcttcaaatgatagttttgagcaatttatgtcttgggttctgtccaatagagatcactca 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||    
T  8036384 acgcgtcactactctcacatatactcggtctggagttacatcttcaaatgct---tttgagcaatttatgtcttgggttctgtccaatagagatcactca 8036288  T
Q  201 tattcactgcttaatcttactattaatgcttggatgcgtggtggtgaagaagagctatataaactcattaatataaatccactactctctttgaaaatta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8036287 tattcactgcttaatcttactattaatgcttggatgcgtggtggtgaagaagagctatataaactcattaatataaatccactactctctttgaaaatta 8036188  T
Q  301 acgggtatggga 312  Q
    | ||||||||||    
T  8036187 atgggtatggga 8036176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 8410691 - 8411003
Alignment:
Q  1 agttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaa 100  Q
    |||||||||||||| |||||||| | ||| |||| ||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  8410691 agttgcctgactgcttattgctctagatattgagttttcttgaagcacgagatgctgttcggacttgcatcttgtctaaacggtggaaggatctttgcaa 8410790  T
Q  101 acgcgtcactactctcacatatactcggtctggagatacatcttcaaatgatagttttgagcaatttatgtcttgggttctgtccaatagagatcactca 200  Q
    |||| ||||||||||||||||||||| ||||  | |||||| |||  |||| |||||| || | |||||||||||||||||||||| |||||||||||||    
T  8410791 acgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgtccagtagagatcactca 8410890  T
Q  201 tattcactgcttaatcttactattaatgcttggat---gcgtggtggtgaagaagagctatataaactcattaatataaatccactactctctttgaaaa 297  Q
    |||||||||||||||||||||||||||||||||||   |   | ||  |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  8410891 tattcactgcttaatcttactattaatgcttggatacaggaagatgaagaagaagagctatgcaaactcattaatataaatccactactctctttgaaaa 8410990  T
Q  298 ttaacgggtatgg 310  Q
    |||| ||||||||    
T  8410991 ttaatgggtatgg 8411003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 9139088 - 9138790
Alignment:
Q  1 agttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaa 100  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  9139088 agttgcctgactgcatattgctccacatattgagttttcttgaagcacaagatgctgttcggacttgcatcttgtctaaacggtggaaggatctttgcaa 9138989  T
Q  101 acgcgtcactactctcacatatactcggtctggagatacatcttcaaatgatagttttgagcaatttatgtcttgggttctgtccaatagagatcactca 200  Q
    | || ||||||||||||||||||||| |  |  |  ||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  9138988 atgcctcactactctcacatatactccggttttacttacatcttcgaatgatagttttgagcaatttatgtcttgggttctgtcgagtagagatcactca 9138889  T
Q  201 tattcactgcttaatcttactattaatgcttggatgcgtggtggtgaagaagagctatataaactcattaatataaatccactactctctttgaaaatt 299  Q
    | |||||| ||||||||||||||  ||||||| |||   || |  |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  9138888 tcttcactacttaatcttactatccatgcttgtatggacggagcggaagaagacctatataaactcattaaaataaatccacttctctctttgaaaatt 9138790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 3 - 310
Target Start/End: Complemental strand, 8041899 - 8041595
Alignment:
Q  3 ttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaac 102  Q
    ||||||||||||||||||||||||| | || | ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8041899 ttgcctgactgcatattgctccacacattgggttttcttgaagcacgagatgctgttcggacttgtatcttgtctaaacggtggaaggatctttgcaaac 8041800  T
Q  103 gcgtcactactctcacatatactcggtctggagatacatcttcaaatgatagttttgagcaatttatgtcttgggttctgtccaatagagatcactcata 202  Q
    |||||||||||||||||||||||| ||||  |  |||||||||  |||| || | | || |||||||||||||||||||||||| |||||||||||||||    
T  8041799 gcgtcactactctcacatatactccgtctccacttacatcttcgtatgaaagatctaagaaatttatgtcttgggttctgtccagtagagatcactcata 8041700  T
Q  203 ttcactgcttaatcttactattaatgcttggatgcgtggtggtgaagaagagctatataaactcattaatataaatccactactctctttgaaaattaac 302  Q
    ||| || ||||||||||||||| |||||||||| |     |  || |||||||||| ||||||||||||||||||||| ||||||||||||||||||||     
T  8041699 ttccctacttaatcttactattgatgcttggatac---aggaagatgaagagctatgtaaactcattaatataaatccgctactctctttgaaaattaat 8041603  T
Q  303 gggtatgg 310  Q
    ||||||||    
T  8041602 gggtatgg 8041595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8416344 - 8416567
Alignment:
Q  1 agttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaa 100  Q
    |||||||||||||| |||||||||| ||| |||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8416344 agttgcctgactgcttattgctccatatattgagttttcttgaagcacgagatgctgttcggacttgtatcttgtctaaacggtggaaggatctttgcaa 8416443  T
Q  101 acgcgtcactactctcacatatactcggtctggagatacatcttcaaatgatagttttgagcaatttatgtcttgggttctgtccaatagagatcactca 200  Q
    |||| ||||||||||||||||||||| ||||  |  |||||||||  || || | | | || |||||||||||||||||||||||| ||||||||| |||    
T  8416444 acgcctcactactctcacatatactccgtctctatttacatcttcgtattatgggtataagaaatttatgtcttgggttctgtccattagagatcattca 8416543  T
Q  201 tattcactgcttaatcttactatt 224  Q
    ||||| || |||||||| ||||||    
T  8416544 tattccctacttaatctaactatt 8416567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 8356602 - 8356480
Alignment:
Q  1 agttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaa 100  Q
    ||||||| |||||| ||||| |||||||| |||| |||||||||||| |||||| ||||| |||||| |||||||||||||| |||||||||||||||||    
T  8356602 agttgccagactgcttattggtccacatattgagttttcttgaagcagaagatgttgttcggacttgcatcttgtctaaacgatggaaggatctttgcaa 8356503  T
Q  101 acgcgtcactactctcacatata 123  Q
    |||| || ||| |||||||||||    
T  8356502 acgcctccctattctcacatata 8356480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 8403640 - 8403762
Alignment:
Q  1 agttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaa 100  Q
    |||| |||||||||||| | ||||||||| |||| ||||||||||||| ||| ||||||| |||||| |||||||||||||| |||||||||||||||||    
T  8403640 agttacctgactgcatactcctccacataatgagttttcttgaagcacgagacgctgttcggacttgcatcttgtctaaacgatggaaggatctttgcaa 8403739  T
Q  101 acgcgtcactactctcacatata 123  Q
    |||  ||||||||||| ||||||    
T  8403740 acgtctcactactctcgcatata 8403762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 43144961 - 43144839
Alignment:
Q  1 agttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaa 100  Q
    ||||||| ||||||||| ||||||| ||| |||| ||||||||||||| ||| | |||||  ||||| ||||||||||| || |||||||||||||||||    
T  43144961 agttgcccgactgcatactgctccatataatgagttttcttgaagcacgagacgttgttcgaacttgcatcttgtctaagcgatggaaggatctttgcaa 43144862  T
Q  101 acgcgtcactactctcacatata 123  Q
    ||| ||||||||||||| |||||    
T  43144861 acgtgtcactactctcaaatata 43144839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 8359648 - 8359526
Alignment:
Q  1 agttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaa 100  Q
    |||| |||||||||||| ||||||||||| |||| ||| |  |||| | ||| |||||||  ||||| |||||||||||||| |||||||||||||||||    
T  8359648 agttacctgactgcatactgctccacataatgagttttttgaaagctcgagacgctgttcgaacttgcatcttgtctaaacgatggaaggatctttgcaa 8359549  T
Q  101 acgcgtcactactctcacatata 123  Q
    |||  || |||||||||||||||    
T  8359548 acgtctccctactctcacatata 8359526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 8359490 - 8359437
Alignment:
Q  171 tcttgggttctgtccaatagagatcactcatattcactgcttaatcttactatt 224  Q
    |||||||||| ||| | |||||||||||||| ||| || |||||||||||||||    
T  8359490 tcttgggttcggtctagtagagatcactcatgttccctacttaatcttactatt 8359437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 5476179 - 5476301
Alignment:
Q  1 agttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaa 100  Q
    |||| |||||||||||| | ||||||||| |||| ||||||||||||| ||||||||||| |||||| |||||||||||||| |||||||||||||||||    
T  5476179 agttacctgactgcatactcctccacataatgagttttcttgaagcacgagatgctgttcggacttgcatcttgtctaaacgatggaaggatctttgcaa 5476278  T
Q  101 acgcgtcactactctcacatata 123  Q
    |||  ||||||||||||||||||    
T  5476279 acgtctcactactctcacatata 5476301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 5476320 - 5476393
Alignment:
Q  151 atagttttgagcaatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactatt 224  Q
    |||||||| || | |||| ||||||||||||||| | ||||||||| |||| |||||||   ||||||||||||    
T  5476320 atagttttaagaactttaagtcttgggttctgtctagtagagatcaatcatgttcactgtggaatcttactatt 5476393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 301
Target Start/End: Original strand, 33084019 - 33084151
Alignment:
Q  163 aatttatgtcttgggttctgtccaatagagatcactcatattcactgcttaatcttactattaatgcttggatgcgtggtggtgaagaagagctatataa 262  Q
    |||||||||||||| ||||||||| |||||||||||| | |||||| |||||||||||| || ||| |||||||| ||     |||| ||| |||| |||    
T  33084019 aatttatgtcttggattctgtccagtagagatcactcctgttcactacttaatcttactgttgatggttggatgc-tg-----gaaggagacctatgtaa 33084112  T
Q  263 actcattaatataaatccactactctctttgaaaattaa 301  Q
    |||| |||| ||||||||||| |||||||||||||||||    
T  33084113 actcgttaaaataaatccacttctctctttgaaaattaa 33084151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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