View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13199_high_16 (Length: 291)

Name: NF13199_high_16
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13199_high_16
NF13199_high_16
[»] chr1 (6 HSPs)
chr1 (1-291)||(17596024-17596329)
chr1 (1-139)||(30746374-30746512)
chr1 (1-139)||(30767825-30767963)
chr1 (1-93)||(30747647-30747739)
chr1 (1-93)||(30769098-30769190)
chr1 (13-69)||(19883554-19883610)
[»] chr7 (4 HSPs)
chr7 (1-257)||(16252623-16252880)
chr7 (1-257)||(16301622-16301885)
chr7 (167-291)||(5057377-5057504)
chr7 (10-68)||(25992316-25992374)
[»] chr6 (3 HSPs)
chr6 (1-257)||(6633488-6633745)
chr6 (1-189)||(18626334-18626516)
chr6 (247-291)||(18626519-18626563)
[»] scaffold0004 (1 HSPs)
scaffold0004 (5-207)||(382600-382802)
[»] chr2 (3 HSPs)
chr2 (1-257)||(30969330-30969581)
chr2 (118-291)||(5369651-5369827)
chr2 (10-48)||(5369543-5369581)
[»] chr4 (8 HSPs)
chr4 (167-291)||(5066532-5066657)
chr4 (1-97)||(5066403-5066499)
chr4 (102-257)||(9273478-9273634)
chr4 (44-244)||(11489609-11489809)
chr4 (102-257)||(9253507-9253663)
chr4 (12-82)||(9246829-9246899)
chr4 (1-36)||(9219465-9219500)
chr4 (10-56)||(22271096-22271142)
[»] chr3 (2 HSPs)
chr3 (2-201)||(14148591-14148790)
chr3 (248-289)||(16221277-16221318)
[»] scaffold0135 (1 HSPs)
scaffold0135 (1-36)||(30116-30151)
[»] chr8 (2 HSPs)
chr8 (16-69)||(33349847-33349900)
chr8 (167-227)||(37379550-37379610)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 17596024 - 17596329
Alignment:
Q  1 cttgtttatgatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaagat 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17596024 cttgtttatgatgtttgatgatgtaggttaatgaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaagat 17596123  T
Q  101 gcaacatcctgagactctagccgggtcgtacatagtacgcacacatgggtcctgtctgtccactttttaatgaggaagaatacgagttgtcaccaatgat 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  17596124 gcagcatcctgagactctagccgggtcgtacatagtacgcacacatgggtccagtctgtccattttttaatgaggaagaatacgagttgtcaccaatgat 17596223  T
Q  201 tggaattctaagaagaataaaggaatatgttagt-ggtaggtaggat--------------tggataaggacatcccatgtaaagtgactaaagggtaca 285  Q
    |||||| ||| ||||||||||||||||||| ||| ||||||||||||              |||||||||||||||||||||||||||||||||||||||    
T  17596224 tggaatcctaggaagaataaaggaatatgtcagtgggtaggtaggattggataaggactgatggataaggacatcccatgtaaagtgactaaagggtaca 17596323  T
Q  286 acttgt 291  Q
    ||||||    
T  17596324 acttgt 17596329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 30746374 - 30746512
Alignment:
Q  1 cttgtttatgatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaagat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||| |||| |    
T  30746374 cttgtttatgatgtttgatgatgtaggttaaggaatgactctaaagatgtgggaagctgcagcgtggattgaagatgtatcactgaagatgtgaaaagtt 30746473  T
Q  101 gcaacatcctgagactctagccgggtcgtacatagtacg 139  Q
    ||| | ||||  ||||||||| |||||||||||||||||    
T  30746474 gcagcgtcctaggactctagctgggtcgtacatagtacg 30746512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 30767825 - 30767963
Alignment:
Q  1 cttgtttatgatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaagat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||| |||| |    
T  30767825 cttgtttatgatgtttgatgatgtaggttaaggaatgactctaaagatgtgggaagctgcagcgtggattgaagatgtatcactgaagatgtgaaaagtt 30767924  T
Q  101 gcaacatcctgagactctagccgggtcgtacatagtacg 139  Q
    ||| | ||||  ||||||||| |||||||||||||||||    
T  30767925 gcagcgtcctaggactctagctgggtcgtacatagtacg 30767963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 30747647 - 30747739
Alignment:
Q  1 cttgtttatgatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtg 93  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| |||||||||    
T  30747647 cttgtttattatgtttgatgatgtaggttaaggaatgactctaaagacgtgggaagctgcagcgtggattgaagatgtatcgctgaagatgtg 30747739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 30769098 - 30769190
Alignment:
Q  1 cttgtttatgatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtg 93  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| |||||||||    
T  30769098 cttgtttattatgtttgatgatgtaggttaaggaatgactctaaagacgtgggaagctgcagcgtggattgaagatgtatcgctgaagatgtg 30769190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 19883610 - 19883554
Alignment:
Q  13 gtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggat 69  Q
    ||||||||||||||||||||||||  |||| ||||||| ||||| |||||| |||||    
T  19883610 gtttgatgatgtaggttaaggaattgctctaaagatgtgggaagttgcagcatggat 19883554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 16252623 - 16252880
Alignment:
Q  1 cttgtttatgatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaagat 100  Q
    |||||||||||| |||||||||||| |||||||||||||||| ||||||| |||||||||| | ||||||||| ||||||||| |||||||||||||| |    
T  16252623 cttgtttatgatatttgatgatgtaagttaaggaatgactctaaagatgtgggaagctgcaacatggattgaaaatgtatcgctgaagatgtggaaagtt 16252722  T
Q  101 gcaacatcctgagactctagccgggtcgtacatagtacgcacacatgggtcctgtctgtccactttttaatgaggaagaatacgagttgtcaccaatgat 200  Q
    |||| ||| || |||||||||||||||||||||||||||   || |||||||  | |||||| || ||||| |||||||||| |||||||| ||||| ||    
T  16252723 gcaatatcttgggactctagccgggtcgtacatagtacgagtacgtgggtccaatttgtccatttcttaataaggaagaatatgagttgtccccaattat 16252822  T
Q  201 tggaattctaagaagaataaaggaatatgttagt-ggtaggtaggattggataaggac 257  Q
    |||||| ||| ||||||||||||||| ||| | | |||||||||||| ||||||||||    
T  16252823 tggaatcctaggaagaataaaggaatttgtcaatgggtaggtaggatcggataaggac 16252880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 16301885 - 16301622
Alignment:
Q  1 cttgtttatgatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaagat 100  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||| |    
T  16301885 cttgtttatgatatttgatgatgtaggttaaggaatgactctgaagatgtgggaagttgcaacgtggattgaagatgtatcgctgaagatgtggaaagtt 16301786  T
Q  101 gcaacatcctgagactctagccgggtcgtacatagtac--gcac----acatgggtcctgtctgtccactttttaatgaggaagaatacgagttgtcacc 194  Q
    |||| ||| || |||| ||| |||||||||||||||||  | ||    || ||||||| ||||||||| |  ||||| |||||||||| ||||| || ||    
T  16301785 gcaaaatcatgggactttagtcgggtcgtacatagtacgagtacgagtacgtgggtccagtctgtccattgcttaataaggaagaatatgagttttcccc 16301686  T
Q  195 aatgattggaattctaagaagaataaaggaatatgttagt-ggtaggtaggattggataaggac 257  Q
    |||||||||||||||| ||||||||||| ||||  ||| | |||||||| ||||||||||||||    
T  16301685 aatgattggaattctaggaagaataaagaaataaattaatgggtaggtatgattggataaggac 16301622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 167 - 291
Target Start/End: Complemental strand, 5057504 - 5057377
Alignment:
Q  167 ttaatgaggaagaatacgagttgtcaccaatgattggaattctaagaagaataaaggaatatgttagtg-gtaggtaggattggataaggacatccca-- 263  Q
    |||||||||||||||| |||||||| |||||||||| ||| ||| ||| ||||||||||||||| || | ||||||| |||  |||||||||| ||||      
T  5057504 ttaatgaggaagaatatgagttgtccccaatgattgaaatcctaggaataataaaggaatatgtcagggagtaggtatgatatgataaggacaacccatt 5057405  T
Q  264 tgtaaagtgactaaagggtacaacttgt 291  Q
    |||||| |||| ||| ||||||||||||    
T  5057404 tgtaaaatgaccaaatggtacaacttgt 5057377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 25992374 - 25992316
Alignment:
Q  10 gatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtgga 68  Q
    ||||||||||||||||||||||||||||||| |  |||||| ||| |||| ||||||||    
T  25992374 gatgtttgatgatgtaggttaaggaatgactttggagatgtgggaggctgtagcgtgga 25992316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 6633745 - 6633488
Alignment:
Q  1 cttgtttatgatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaagat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||||||||||| |||||||| || || |    
T  6633745 cttgtttatgatgtttgatgatgtaggttaaggaatgactctgaagatgtaggtagttgcagagtggattgaagatgtatcgctgaagatgtcgagagct 6633646  T
Q  101 gcaacatcctgagactctagccgggtcgtacatagtacgcacacatgggtcctgtctgtccactttttaatgaggaagaatacgagttgtcaccaatgat 200  Q
    ||| | ||||| |||||||| |||||| |||||||||||||    |||||||  | |||||| |  |||||| | ||||||| ||| |||| |  |||||    
T  6633645 gcagcgtcctgggactctagtcgggtcatacatagtacgcaggtgtgggtccaatatgtccattgcttaatgcgaaagaatatgagctgtccctgatgat 6633546  T
Q  201 tggaattctaagaagaataaaggaatatgttag-tggtaggtaggattggataaggac 257  Q
    |||||| ||| |||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  6633545 tggaatcctaggaagaataaaagaatatgctagttggtaggtaggattggataaggac 6633488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 18626334 - 18626516
Alignment:
Q  1 cttgtttatgatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaagat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||      |||||| ||| |||||||||||||||||||||||||  |||||||||||||  |    
T  18626334 cttgtttatgatgtttgatgatgtaggttaaggaatgtct------atgtagaaagatgcagcgtggattgaagatgtatcgttgaagatgtggaaaact 18626427  T
Q  101 gcaacatcctgagactctagccgggtcgtacatagtacgcacacatgggtcctgtctgtccactttttaatgaggaagaatacgagttg 189  Q
    ||| |||||||| ||||||| |||||| ||||||||| ||| || | ||||  || |||||| || |||||||||||||||| ||||||    
T  18626428 gcagcatcctgaaactctagtcgggtcatacatagtatgcatacgttggtctagtatgtccatttcttaatgaggaagaatatgagttg 18626516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 18626519 - 18626563
Alignment:
Q  247 tggataaggacatcccatgtaaagtgactaaagggtacaacttgt 291  Q
    |||||||||||| |||||||||| |||  ||||||||||||||||    
T  18626519 tggataaggacaacccatgtaaaatgaacaaagggtacaacttgt 18626563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 382600 - 382802
Alignment:
Q  5 tttatgatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaagatgcaa 104  Q
    |||||| ||||||||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||| |  ||||||||||||| ||||     
T  382600 tttatgttgtttgatgatgtaggttaaggaatgactttgaagatgtaggaagttgcagcatggattgaagatgtatcactaaagatgtggaaagctgcat 382699  T
Q  105 catcctgagactctagccgggtcgtacatagtacgcacacatgggtcctgtctgtccactttttaatgaggaagaatacgagttgtcaccaatgattgga 204  Q
    ||||||| ||| ||||||||||||||||||| ||||| |  ||||||| ||||||||  |||||| |||||||||||| |||||||| | ||||||||||    
T  382700 catcctgggacgctagccgggtcgtacatagcacgcatatgtgggtccagtctgtcccttttttattgaggaagaatatgagttgtccctaatgattgga 382799  T
Q  205 att 207  Q
    |||    
T  382800 att 382802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 30969330 - 30969581
Alignment:
Q  1 cttgtttatgatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaagat 100  Q
    ||||||||||||||||||||||||||||||||||||| || | ||||||||||||| | || ||||||||| ||||| ||| |    ||| || |||| |    
T  30969330 cttgtttatgatgtttgatgatgtaggttaaggaatggctttaaagatgtaggaagatacatcgtggattggagatgcatcactatggatttgaaaagct 30969429  T
Q  101 gcaacatcctgagactctagccgggtcgtacatagtacgcacacatgggtcctgtctgtccactttttaatgaggaagaatacgagttgtcaccaatgat 200  Q
     || | ||||| |||||||||||||| ||| ||||||||   |   |||||  || |  |      |||||||||||||||| |||||||| ||||||||    
T  30969430 acatcgtcctgggactctagccgggttgtaaatagtacgagtatgcgggtctagtattgc------ttaatgaggaagaatatgagttgtccccaatgat 30969523  T
Q  201 tggaattctaagaagaataaaggaatatgttagt-ggtaggtaggattggataaggac 257  Q
    |||||| ||| |||| |||||  |||||| |||| |||||||||||||||||||||||    
T  30969524 tggaatcctatgaagtataaaataatatgctagtgggtaggtaggattggataaggac 30969581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 291
Target Start/End: Original strand, 5369651 - 5369827
Alignment:
Q  118 tagccgggtcgtacatagtacgcacacatgggtcct-gtctgtccactttttaatgaggaagaatacgagttgtcaccaatgattggaattctaagaaga 216  Q
    |||| ||||||||||||||||| || |||||| ||  ||||| ||| |  |||||||||||||||| ||| |||| |||||||||| ||| ||| ||| |    
T  5369651 tagcagggtcgtacatagtacgaacgcatgggaccacgtctgaccattgcttaatgaggaagaatatgagctgtccccaatgattgaaatcctaggaata 5369750  T
Q  217 ataaaggaatatgttagtggtaggtaggattggataaggacatccc--atgtaaagtgactaaagggtacaacttgt 291  Q
    || |||||| |||| ||  |||||||||||  |||||||||| |||  |||| || |||| ||||||||||||||||    
T  5369751 atgaaggaacatgtcaggagtaggtaggatatgataaggacagcccatatgtgaaatgaccaaagggtacaacttgt 5369827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 5369543 - 5369581
Alignment:
Q  10 gatgtttgatgatgtaggttaaggaatgactcttaagat 48  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  5369543 gatgtttgatgatgtaggttaaggaatgactctgaagat 5369581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 167 - 291
Target Start/End: Original strand, 5066532 - 5066657
Alignment:
Q  167 ttaatgaggaagaatacgagttgtcaccaatgattggaattctaagaagaataaaggaatatgttagtgg-taggtaggattggataaggacatcccatg 265  Q
    ||||| ||||| |||| |||||||| ||||||||||| || ||| |||||||||| | ||| |||||||| |||||||||||||||||||||| || |||    
T  5066532 ttaattaggaataatatgagttgtccccaatgattgggatcctaggaagaataaaagcatacgttagtgggtaggtaggattggataaggacaacctatg 5066631  T
Q  266 taaagtgactaaagggtacaacttgt 291  Q
    |||| |||| ||||||||||||||||    
T  5066632 taaaatgaccaaagggtacaacttgt 5066657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 5066403 - 5066499
Alignment:
Q  1 cttgtttatgatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaa 97  Q
    ||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| |||| | |||||||||||||| ||||  ||||| ||||||    
T  5066403 cttgtttgtgatgtttgatgatgtaggttaaggaatgactttaaagatgtaggaagttgcaacttggattgaagatgtctcgctaaagatttggaaa 5066499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 102 - 257
Target Start/End: Original strand, 9273478 - 9273634
Alignment:
Q  102 caacatcctgagactctagccgggtcgtacatagtacgcacacatgggtcctgtctgtccactttttaatgaggaagaatacgagttgtcaccaatgatt 201  Q
    |||||||||| |||||||| | ||| ||||||||||| || || |||| |  ||||||||| || ||||  |||||| ||| ||| |||| |||||||||    
T  9273478 caacatcctgggactctagtcaggttgtacatagtacacatacgtggggctagtctgtccatttcttaacaaggaagcatatgagatgtccccaatgatt 9273577  T
Q  202 ggaattctaagaagaataaaggaatatgtta-gtggtaggtaggattggataaggac 257  Q
    ||| | |||||||||||||| ||||||| ||  ||||||||||||||||||||||||    
T  9273578 ggattcctaagaagaataaaagaatatgctatttggtaggtaggattggataaggac 9273634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 44 - 244
Target Start/End: Complemental strand, 11489809 - 11489609
Alignment:
Q  44 aagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaagatgcaacatcctgagactctagccgggtcgtacatagtacgcaca 143  Q
    ||||||| ||||| |||||||||||||||||||| || ||  | ||| ||| ||| |||| || |||| ||||||||  || || |||||||||||   |    
T  11489809 aagatgtgggaagttgcagcgtggattgaagatgcattgcttaggatttgggaagctgcagcaccctgggactctagttggttcatacatagtacgagta 11489710  T
Q  144 catgggtcctgtctgtccactttttaatgaggaagaatacgagttgtcaccaatgattggaattctaagaagaataaaggaatatgttagtggtaggtag 243  Q
    | ||||||  ||||||||| |  |||||||||||||||| |||||||| | |||||||| ||| ||| ||| ||||| |||||||| ||| |||||||||    
T  11489709 cgtgggtctagtctgtccattgcttaatgaggaagaatatgagttgtcccaaatgattgaaatcctatgaataataagggaatatgctaggggtaggtag 11489610  T
Q  244 g 244  Q
    |    
T  11489609 g 11489609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 257
Target Start/End: Original strand, 9253507 - 9253663
Alignment:
Q  102 caacatcctgagactctagccgggtcgtacatagtacgcacacatgggtcctgtctgtccactttttaatgaggaagaatacgagttgtcaccaatgatt 201  Q
    |||||||||| |||||||| ||||| ||||||||||| || || |||| || ||||||||| || ||||  |||||| ||| ||| |||| | ||| |||    
T  9253507 caacatcctgggactctagtcgggttgtacatagtacacatacgtggggccagtctgtccatttcttaacaaggaagcatatgagatgtccctaataatt 9253606  T
Q  202 ggaattctaagaagaataaaggaatatgtta-gtggtaggtaggattggataaggac 257  Q
    ||| | |||||||||||||| ||||||| ||  |||||| |||||||||||||||||    
T  9253607 ggattcctaagaagaataaaagaatatgctatttggtagctaggattggataaggac 9253663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 9246829 - 9246899
Alignment:
Q  12 tgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcg 82  Q
    |||||| |||||||||| ||||||||||||| |||| | |  ||||||||| |||||||||||||||||||    
T  9246829 tgtttggtgatgtaggtgaaggaatgactctgaagaagaataaagctgcagtgtggattgaagatgtatcg 9246899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9219465 - 9219500
Alignment:
Q  1 cttgtttatgatgtttgatgatgtaggttaaggaat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  9219465 cttgtttatgatgtttgatgatgtaggttaaggaat 9219500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 22271142 - 22271096
Alignment:
Q  10 gatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaag 56  Q
    |||||||||||||||||||| |||||||||| | ||||||| |||||    
T  22271142 gatgtttgatgatgtaggttgaggaatgactttgaagatgtgggaag 22271096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 14148790 - 14148591
Alignment:
Q  2 ttgtttatgatgtttgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggattgaagatgtatcgccgaagatgtggaaagatg 101  Q
    ||||||||||||||||| ||| ||||||| ||||||||||| || |||| |||||| | ||||||||   | | ||| || | || ||| ||||||| ||    
T  14148790 ttgtttatgatgtttgaagatataggttatggaatgactctaaatatgtgggaagcagtagcgtggacgaaggttgtttctcagaggatttggaaagctg 14148691  T
Q  102 caacatcctgagactctagccgggtcgtacatagtacgcacacatgggtcctgtctgtccactttttaatgaggaagaatacgagttgtcaccaatgatt 201  Q
    |||| || |||  |||| ||| ||||||||| ||||||  ||| || |||  ||||| ||| || |||||| |||| |||| || ||||| |||||||||    
T  14148690 caacgtcatgaatctctcgccaggtcgtacaaagtacgagcacgtgcgtctagtctggccatttcttaatggggaataatatgaattgtctccaatgatt 14148591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 16221318 - 16221277
Alignment:
Q  248 ggataaggacatcccatgtaaagtgactaaagggtacaactt 289  Q
    ||||||||||| |||||||||| |||| ||||||||||||||    
T  16221318 ggataaggacaacccatgtaaaatgaccaaagggtacaactt 16221277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30116 - 30151
Alignment:
Q  1 cttgtttatgatgtttgatgatgtaggttaaggaat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  30116 cttgtttatgatgtttgatgatgtaggttaaggaat 30151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 33349900 - 33349847
Alignment:
Q  16 tgatgatgtaggttaaggaatgactcttaagatgtaggaagctgcagcgtggat 69  Q
    ||||||||||||||||||||||||| | ||||| | ||||| ||||||||||||    
T  33349900 tgatgatgtaggttaaggaatgactttaaagatatgggaagatgcagcgtggat 33349847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 37379610 - 37379550
Alignment:
Q  167 ttaatgaggaagaatacgagttgtcaccaatgattggaattctaagaagaataaaggaata 227  Q
    |||||||||||||||| ||| || | ||||||||| ||||||||||||  ||| |||||||    
T  37379610 ttaatgaggaagaatatgagctggctccaatgattagaattctaagaattatagaggaata 37379550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University