View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13199_high_20 (Length: 240)

Name: NF13199_high_20
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13199_high_20
NF13199_high_20
[»] chr1 (3 HSPs)
chr1 (1-222)||(17596354-17596581)
chr1 (125-176)||(19883137-19883188)
chr1 (67-164)||(26780452-26780548)
[»] chr6 (2 HSPs)
chr6 (5-218)||(6633188-6633406)
chr6 (1-218)||(18626588-18626804)
[»] chr4 (5 HSPs)
chr4 (4-222)||(9273710-9273933)
chr4 (21-222)||(9253756-9253962)
chr4 (64-176)||(5066749-5066862)
chr4 (67-176)||(11489419-11489526)
chr4 (151-212)||(8912158-8912220)
[»] chr8 (2 HSPs)
chr8 (76-222)||(15258414-15258561)
chr8 (67-168)||(22541518-22541618)
[»] chr7 (5 HSPs)
chr7 (1-216)||(16301330-16301549)
chr7 (146-222)||(16253090-16253167)
chr7 (74-174)||(5057174-5057275)
chr7 (1-51)||(16252953-16253003)
chr7 (7-51)||(5057301-5057345)
[»] chr5 (1 HSPs)
chr5 (93-222)||(24884717-24884847)
[»] chr3 (2 HSPs)
chr3 (69-222)||(32202843-32203001)
chr3 (1-207)||(16221039-16221250)
[»] chr2 (4 HSPs)
chr2 (123-222)||(30971954-30972054)
chr2 (67-176)||(5369922-5370030)
chr2 (74-118)||(30969731-30969775)
chr2 (76-138)||(21822500-21822561)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17596354 - 17596581
Alignment:
Q  1 ggacacccatgtgttagtgccaagggtccaaaaattcaacttagaattggaaaaggtccaggttacgg------ttagtagctttaaagatctcattcca 94  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||      |||||||||||| |||||||||||||    
T  17596354 ggacacccatgtgttagtgccaagggtccaaaaattcatcttagaattggaaaaggtccaggttacggctagggttagtagctttagagatctcattcca 17596453  T
Q  95 tctcatcttttaccatagatgagcgtgatagctagattctagagtctttagagtagattacttggtgatgctttggctcaccttattccttaaggattgt 194  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17596454 tctcatcttctaccatagatgagcgtgatagctagattctagagtctttagagtagattacttggtgatgctttggctcaccttattccttaaggattgt 17596553  T
Q  195 aatctcgtgacaactctatctattctat 222  Q
    ||||||||||||||||||||||||||||    
T  17596554 aatctcgtgacaactctatctattctat 17596581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 19883188 - 19883137
Alignment:
Q  125 gctagattctagagtctttagagt-agattacttggtgatgctttggctcacc 176  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  19883188 gctagattctagaga-tttagagttagattacttggtgatgctttggctcacc 19883137  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 164
Target Start/End: Complemental strand, 26780548 - 26780452
Alignment:
Q  67 ggttagtagctttaaagatctcattccatctcatcttttaccatagatgagcgtgatagctagattctagagtctttagag-tagattacttggtgatg 164  Q
    |||||||||||||| || ||||||||||||||||||| | ||||| |||||| || |   ||||||||||||  ||||||| ||||||| |||||||||    
T  26780548 ggttagtagctttagagttctcattccatctcatcttct-ccataaatgagcatggttaatagattctagag-gtttagagttagattatttggtgatg 26780452  T

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Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 6633406 - 6633188
Alignment:
Q  5 acccatgtgttagtgccaagggtccaaaaattcaacttagaattggaaaaggtccaggttacggttagt------agctttaaagatctcattccatctc 98  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||| | |  ||| ||||||| |||       || |||| || ||||||||||||||    
T  6633406 acccatgtgttagtgccaagtgtccgaaaattcatcttagaattggagagg--ccatgttacggctagggttatcagttttagagttctcattccatctc 6633309  T
Q  99 atcttttaccatagatgagcgtgatagctagattctagagtctttagagtagattacttggtgatgctttggctcaccttattcctt-aaggattgtaat 197  Q
    ||||| |||||||||||||| || ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  6633308 atcttctaccatagatgagcatggtagctagattctagagtttttagagtaaattacttggtgatgctttggctcaccttattccttcaaggattataat 6633209  T
Q  198 ctcgtgacaactctatctatt 218  Q
    || ||| ||||||| ||||||    
T  6633208 cttgtggcaactctgtctatt 6633188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 18626588 - 18626804
Alignment:
Q  1 ggacacccatgtgttagtgccaagggtccaaaaattcaacttagaattggaaaaggtccaggttac------ggttagtagctttaaagatctcattcca 94  Q
    ||||||||||||||||||||||||||| | |||||||| |||| ||||||| | |  |||||||||      |||||  | ||||| |||| ||||||||    
T  18626588 ggacacccatgtgttagtgccaagggttcgaaaattcaccttataattggagagg--ccaggttacagctagggttatcaactttagagatttcattcca 18626685  T
Q  95 tctcatcttttaccatagatgagcgtgatagctagattctagagtctttagagtagattacttggtgatgctttggctcaccttattcctt-aaggattg 193  Q
    ||||||||| |||| ||||||||| || |||||| ||||||||||  ||||| ||||||||||||||||| |||||      |||||| || ||||||||    
T  18626686 tctcatcttctaccctagatgagcatggtagctaaattctagagttcttagactagattacttggtgatgttttgg------ttattctttaaaggattg 18626779  T
Q  194 taatctcgtgacaactctatctatt 218  Q
    |||||| ||||||||||||||||||    
T  18626780 taatcttgtgacaactctatctatt 18626804  T

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Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 9273710 - 9273933
Alignment:
Q  4 cacccatgtgttagtgccaagggtccaaaaattcaacttagaattggaaaaggtccaggttacg------gttagtagctttaaagatctcattccatct 97  Q
    ||||| |||||||||| |||||||| ||||||||| |||||||||||||| |||| ||||||||      ||||| ||||||| ||||||||||||||||    
T  9273710 cacccgtgtgttagtgtcaagggtctaaaaattcaccttagaattggaaa-ggtc-aggttacgactagggttagcagctttagagatctcattccatct 9273807  T
Q  98 catcttttaccatagatgagcgtgatagctagattctagagtctttagagtagattacttggtgatgctttggctcaccttattcctt-aaggattgtaa 196  Q
    |||||| || |||| |||||| || ||  ||||| | |||||  ||| | |||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  9273808 catcttctaacataaatgagcatggtatatagatcccagagttcttatactagattacttggtgatgctttgcctcaccttattccttcaaggattgtaa 9273907  T
Q  197 tctcgtgacaactctatctattctat 222  Q
    ||| | |||||||| |||||||||||    
T  9273908 tcttgcgacaactcgatctattctat 9273933  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 9253756 - 9253962
Alignment:
Q  21 caagggtccaaaaattcaacttagaattggaaaaggtccaggttacg------gttagtagctttaaagatctcattccatctcatcttttaccatagat 114  Q
    |||||||| ||||||||| |||||||||||||| |||| ||||||||      ||||| ||||||| ||||| |||||||||||||||| ||||||| ||    
T  9253756 caagggtctaaaaattcaccttagaattggaaa-ggtc-aggttacgactagggttagcagctttagagatcccattccatctcatcttctaccataaat 9253853  T
Q  115 gagcgtgatagctagattctagagtctttagagtagattacttggtgatgctttggctcaccttattcctt-aaggattgtaatctcgtgacaactctat 213  Q
    |||| || ||  |||||||||||||  ||| | |||||||||||||||||||||  ||||||||||||||| |||||||||||||| | || |||||||     
T  9253854 gagcatggtatatagattctagagttcttatactagattacttggtgatgcttttcctcaccttattccttcaaggattgtaatcttgcgataactctac 9253953  T
Q  214 ctattctat 222  Q
    |||||||||    
T  9253954 ctattctat 9253962  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 5066749 - 5066862
Alignment:
Q  64 tacggttagtagctttaaagatctcattccatctcatcttttaccatagatgagcgtgatagctagattctagag-tctttagagt-agattacttggtg 161  Q
    ||||||||  |||||||  ||||||| ||||||||||||| | |||||||||| | || | ||||||||||| || | |||||||| |||||||||||||    
T  5066749 tacggttaacagctttagcgatctcactccatctcatcttct-ccatagatgaacatggtggctagattctaaaggtttttagagttagattacttggtg 5066847  T
Q  162 atgctttggctcacc 176  Q
    |||||||||||||||    
T  5066848 atgctttggctcacc 5066862  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 11489526 - 11489419
Alignment:
Q  67 ggttagtagctttaaagatctcattccatctcatcttttaccatagatgagcgtgatagctagattctagagtctttagagtagattacttggtgatgct 166  Q
    |||||| |||||||||||| | ||||||||||||||| | | |||||||||| || | |||| |||||||||| || ||  || ||||||||||||||||    
T  11489526 ggttagcagctttaaagatataattccatctcatcttcttc-atagatgagcatggtggctatattctagagttttgagt-taaattacttggtgatgct 11489429  T
Q  167 ttggctcacc 176  Q
    ||||||||||    
T  11489428 ttggctcacc 11489419  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 8912158 - 8912220
Alignment:
Q  151 attacttggtgatgctttggctcaccttattcc-ttaaggattgtaatctcgtgacaactcta 212  Q
    ||||||||||||||||||  || |||||||||| |||||||||||| ||| ||||||||||||    
T  8912158 attacttggtgatgctttcacttaccttattcctttaaggattgtagtcttgtgacaactcta 8912220  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 15258561 - 15258414
Alignment:
Q  76 ctttaaagatctcattccatctcatcttttaccatagatgagcgtgatagctagattctagagtctttagagtagattacttggtgatgctttggctcac 175  Q
    ||||| ||||| |||||||||||||||| |||||||||||||| || | ||||||||||| |||  ||||||||||||||||||||| | |||| |||||    
T  15258561 ctttagagatcacattccatctcatcttctaccatagatgagcatggtggctagattctaaagttcttagagtagattacttggtgacgttttgactcac 15258462  T
Q  176 cttattcctt-aaggattgtaatctcgtgacaactctatctattctat 222  Q
    |||||||||| || || |||||||| ||||||||||||||||||||||    
T  15258461 cttattccttcaaagagtgtaatcttgtgacaactctatctattctat 15258414  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 22541518 - 22541618
Alignment:
Q  67 ggttagtagctttaaagatctcattccatctcatcttttaccatagatgagcgtgatagctagattctagagtctttagagtagattacttggtgatgct 166  Q
    |||||| ||||||| || | |||||||||||||| ||  ||||||||||||| || | ||||| || ||||| ||| |   |||||||||||||||||||    
T  22541518 ggttagcagctttagagttttcattccatctcatattc-accatagatgagcatggtggctagtttttagaggcttaaagttagattacttggtgatgct 22541616  T
Q  167 tt 168  Q
    ||    
T  22541617 tt 22541618  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 16301549 - 16301330
Alignment:
Q  1 ggacacccatgtgttagtgccaagggtccaaaaattcaacttagaattggaaaag----gtccaggttacggttagtagctttaaagatctcattccatc 96  Q
    ||||||||||||||||||| |||||||| ||||||| | |||||||||||| |||    ||   || || |||||| ||||||| ||||||| ||||||     
T  16301549 ggacacccatgtgttagtgtcaagggtcaaaaaatttaccttagaattggagaagtcaggttatggctagggttagcagctttagagatctcgttccatt 16301450  T
Q  97 tcatcttttaccatagatgagcgtgatagctagattctagagtctttagagtagattacttggtgatgctttggctcaccttattcctt-aaggattgta 195  Q
    |||||| || | |||||| ||  || || ||||| | |||||| ||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||    
T  16301449 tcatctctt-ctatagatcagtatggtaactagaatatagagtgtttagagtaaattacgtggtgatgctttggcttaccttattccttcaaggattgta 16301351  T
Q  196 atctcgtgacaactctatcta 216  Q
    |||| ||||||||||||||||    
T  16301350 atcttgtgacaactctatcta 16301330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 16253090 - 16253167
Alignment:
Q  146 agtagattacttggtgatgctttggctcaccttattcctt-aaggattgtaatctcgtgacaactctatctattctat 222  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||| |||||    
T  16253090 agtagattacttggtgatgctttggctcaccttattccttcaaggattgtaatcttatgacaactctatctaatctat 16253167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 174
Target Start/End: Complemental strand, 5057275 - 5057174
Alignment:
Q  74 agctttaaagatctcattccatctcatcttttaccatagatgagcgtgatag-ctagattctagagtctttagag-tagattacttggtgatgctttggc 171  Q
    ||||||| |||||||||||||||||||||| | |||||||| ||| ||  || ||||||||||||||  |||||| ||||||||||||||||  ||||||    
T  5057275 agctttagagatctcattccatctcatcttct-ccatagataagcatggaagcctagattctagagttcttagagttagattacttggtgatattttggc 5057177  T
Q  172 tca 174  Q
    |||    
T  5057176 tca 5057174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 16252953 - 16253003
Alignment:
Q  1 ggacacccatgtgttagtgccaagggtccaaaaattcaacttagaattgga 51  Q
    |||||| ||||||||||||| |||||||| |||||| | ||||||||||||    
T  16252953 ggacacacatgtgttagtgcaaagggtccgaaaatttaccttagaattgga 16253003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 5057345 - 5057301
Alignment:
Q  7 ccatgtgttagtgccaagggtccaaaaattcaacttagaattgga 51  Q
    |||| |||||||||||||||||| ||| |||| ||||||||||||    
T  5057345 ccatttgttagtgccaagggtccgaaagttcatcttagaattgga 5057301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 24884847 - 24884717
Alignment:
Q  93 catctcatcttttaccatagatgagcgtgatagctagattctagagtctttagagtagattacttggtgatgctttggctcaccttattcctt-aaggat 191  Q
    ||||| ||||| ||||||||| |||| || |||||||  ||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  24884847 catcttatcttctaccatagacgagcatggtagctaggatctagagactttagagtagattacttagtgatgctttggctcgccttattccttcaaggat 24884748  T
Q  192 tgtaatctcgtgacaactctatctattctat 222  Q
    | |||||| ||||||||||||||||||||||    
T  24884747 tataatcttgtgacaactctatctattctat 24884717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 32203001 - 32202843
Alignment:
Q  69 ttagtagctttaaagatctcattccatctcatcttttaccatagatgagcgtgatagctagattctagagtctttagagtag----attacttggtgatg 164  Q
    |||| ||||||| |||| ||||| ||||||||||| || |||| |||||  || ||||||||| ||||||| ||| ||||||    ||||||||||||||    
T  32203001 ttagcagctttagagatttcatttcatctcatcttctaacataaatgagtatggtagctagatactagagtttttggagtagctagattacttggtgatg 32202902  T
Q  165 ctttggctcaccttattc-cttaaggattgtaatctcgtgacaactctatctattctat 222  Q
    ||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  32202901 ctttggctcaccttattcatttaaggattgtaatcttttgacaactctatctattctat 32202843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 16221250 - 16221039
Alignment:
Q  1 ggacacccatgtgttagtgccaagggtccaaaaattcaacttagaattggaaaaggtccaggttacg------gttagtagctttaaagatctcattcca 94  Q
    |||||||||||| |||||||||||||||  |||||||| || ||||||||| | |||| || |||||      ||||| ||||||| ||| | |||| ||    
T  16221250 ggacacccatgttttagtgccaagggtctgaaaattcacctgagaattggaga-ggtc-agattacgactagggttagcagctttagagaccacatttca 16221153  T
Q  95 tctcatcttttaccatagatgagcgtgatagctagattctagagtctttagagtagattacttggtgatgctttggctcaccttattcc-ttaaggattg 193  Q
    ||||||||| ||||||| |||||| || | |||||||| ||||||  ||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||    
T  16221152 tctcatcttctaccataaatgagcatggtggctagattttagagttcttagagtagattacttggtcatgctttggctcaccatattcctttaaggaatg 16221053  T
Q  194 taatctcgtgacaa 207  Q
    |||||  |||||||    
T  16221052 taatcatgtgacaa 16221039  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 30971954 - 30972054
Alignment:
Q  123 tagctagattctagagtctttagagtagattacttggtgatgctttggctcaccttattcctt-aaggattgtaatctcgtgacaactctatctattcta 221  Q
    ||||||| |||||||||  ||| ||||||||||||||| |||||||||||||||||||||||| ||  |||||||||| | || ||||||||||||||||    
T  30971954 tagctagtttctagagttcttatagtagattacttggtaatgctttggctcaccttattccttcaaatattgtaatcttgggataactctatctattcta 30972053  T
Q  222 t 222  Q
    |    
T  30972054 t 30972054  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 5369922 - 5370030
Alignment:
Q  67 ggttagtagctttaaagatctcattccatctcatcttttaccatagatgagcgtgatagctagattctagagtctttagagt-agattacttggtgatgc 165  Q
    |||||| | ||||| || ||||||| ||||||||||| | |||||||||||| |||  ||||||||||||||  |||||||| |||||||||||||||||    
T  5369922 ggttagcaactttagagttctcatttcatctcatcttct-ccatagatgagcatgagtgctagattctagagg-tttagagttagattacttggtgatgc 5370019  T
Q  166 tttggctcacc 176  Q
    || ||||||||    
T  5370020 ttcggctcacc 5370030  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 30969731 - 30969775
Alignment:
Q  74 agctttaaagatctcattccatctcatcttttaccatagatgagc 118  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||    
T  30969731 agctttatagatctcattccatctcatcttctaccatagatgagc 30969775  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 21822500 - 21822561
Alignment:
Q  76 ctttaaagatctcattccatctcatcttttaccatagatgagcgtgatagctagattctagag 138  Q
    ||||| || |||||||||||||||||||||  ||||||||||| ||||  |||||||||||||    
T  21822500 ctttagagttctcattccatctcatctttt-tcatagatgagcatgatttctagattctagag 21822561  T

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