View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13199_low_1 (Length: 832)

Name: NF13199_low_1
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13199_low_1
NF13199_low_1
[»] chr2 (2 HSPs)
chr2 (18-524)||(37215954-37216459)
chr2 (521-584)||(19713444-19713506)
[»] chr5 (2 HSPs)
chr5 (522-823)||(42862448-42862733)
chr5 (521-598)||(25043886-25043964)
[»] chr6 (1 HSPs)
chr6 (521-808)||(19814464-19814737)
[»] scaffold0657 (1 HSPs)
scaffold0657 (521-808)||(8299-8572)
[»] chr3 (2 HSPs)
chr3 (708-808)||(1203385-1203489)
chr3 (641-695)||(1203486-1203538)
[»] chr4 (1 HSPs)
chr4 (521-618)||(41951079-41951175)
[»] chr7 (1 HSPs)
chr7 (521-559)||(7646713-7646751)
[»] chr1 (1 HSPs)
chr1 (521-567)||(20600464-20600514)


Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Complemental strand, 37216459 - 37215954
Alignment:
Q  18 caaggagagtccagtggtgtttgtacaaccaagaaggatcatggtaggcacgagaaaattccattcaatggtctacggaaaataatgcgactctcgagta 117  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  37216459 caaggagagtccggtggtgtttgtacaaccaagaaggatcatggtaggcacgagaaaactccactcaatggtctacggaaaataatgcgactctcgagta 37216360  T
Q  118 aggatataaaagttatgtttaaaacattaaagagaagtagagggaaaatgttgaaagtcgtttatgattcatctaaggctgaaggtaacaggggttcaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37216359 aggatataaaagttatgtttaaaacattaaagagaagtagagggaacatgttgaaagtcgtttatgattcacctaaggctgaaggtaacaggggttcaat 37216260  T
Q  218 tatcttctagtagttcttatttatcggttaattgtgatatgaaaattttgatggttttacgtgataaacatgaagtcacaatggatgaatgcatgaagga 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  37216259 tatcttctagtagttcttatttatcggttaattgtgatatgaaaattttgatggttttacgtgataaacatgaagtcacaatagatg-atgcatgaagga 37216161  T
Q  318 ttgataagtctattggggtaaaatacaaaggttgcaaggttattattgttattgttttatctgagatgaagggtggagaaagaggtgggattacatgtta 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  37216160 ttgataagtctattggggtaaaatacaaaggttgcaaggttattattgttattgttttatctaagatgaagggtggagaaagaggggggattacatgtta 37216061  T
Q  418 taaagggagtccgcgtgtggtaaggaaggtgttaatgttgtcaaaggggttgtagagagggaagtgaggacatgtgagtagtggtggttgttagtgtgaa 517  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37216060 taaagggagtccgcgtgtggtaaggaaggtgttaattttgtcaaaggggttgtagagagggaagtgagggcatgtgagtagtggtggttgttagtgtgaa 37215961  T
Q  518 gggtggt 524  Q
    |||||||    
T  37215960 gggtggt 37215954  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 521 - 584
Target Start/End: Complemental strand, 19713506 - 19713444
Alignment:
Q  521 tggtatcagagcaataatcctcggacaaatatttttggggtgggacgtatttgtatgacgcatg 584  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||   ||| ||||||||||    
T  19713506 tggtatcagagcaataatcctcggaaaaata-ttttggggtgggacgatcttgcatgacgcatg 19713444  T

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Target: chr5 (Bit Score: 108; Significance: 8e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 522 - 823
Target Start/End: Original strand, 42862448 - 42862733
Alignment:
Q  522 ggtatcagagcaataatcctcggacaaatatttttggggtgggacgtatttgtatgacgcatgcttttgattgatgtttgagaatgatttgatccatttg 621  Q
    |||||||||| ||||||| |||||| |||||||| ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||     
T  42862448 ggtatcagagtaataatcttcggactaatattttaggg-tgggacgtgtttgtatgacgcatgcttttgattgatgtttgggaatgatttgatcctttt- 42862545  T
Q  622 nnnnnnnngtcttgatgcgttttctgttattaaattgaagatctaaatgtacttgtatatatatgacttcttgatgcttattttaattgaagatgttaag 721  Q
            |||||||    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||                ||||||||||    
T  42862546 --ttttttgtcttgacattttttctgttattaaattgatgatctaaatgtacttgtatatatatggcttcttga----------------agatgttaag 42862627  T
Q  722 cgtaaatctgcagcaattgagt----tggtgtcttatagtcccattaattctttcatggtgtggatatataagttgctaataaatagtttattttgttga 817  Q
    ||| ||||||||||||||||||    || |||| ||||||| | ||||||||||||||||||||||||||| |||||||||| |||| |||||||||| |    
T  42862628 cgtgaatctgcagcaattgagtagtttgttgtcatatagtctctttaattctttcatggtgtggatatataggttgctaatatatagattattttgttta 42862727  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 521 - 598
Target Start/End: Complemental strand, 25043964 - 25043886
Alignment:
Q  521 tggtatcagagcaataatcctcggac--aaatatttttggggtgggacgtatttgtatgacgcatgcttttgattgatgt 598  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||   ||||||||||| || |||||||||||||    
T  25043964 tggtatcagagcaataatcctcggacaaaaatatttttggggtgggacgatcttgtatgacgcgtg-ttttgattgatgt 25043886  T

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Target: chr6 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 521 - 808
Target Start/End: Complemental strand, 19814737 - 19814464
Alignment:
Q  521 tggtatcagagcaataatcctcggacaaatatttttggggtgggacgtatttgtatgacgcatgcttttgattgatgtttgagaatgatttgatccat-- 618  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |||||||||||| || |||||||||||| |||      
T  19814737 tggtatcagagcaataatcctcggactaatatttttggggtgggacgtgtttttatgacgcatgc-tttgattgatgtctgtgaatgatttgattcattg 19814639  T
Q  619 ttgnnnnnnnngtcttgatgcgttttctgttattaaattgaagatctaaatgtacttgtatatatatgacttcttgatgcttattttaattgaagatgtt 718  Q
    ||         |||||||    ||||||||||||||||||| ||||||||||||||||  |||||||||||||                |||||||||||    
T  19814638 ttattttctttgtcttga-catttttctgttattaaattgatgatctaaatgtacttg--tatatatgacttc----------------ttgaagatgtt 19814558  T
Q  719 aagcgtaaatctgcagcaattga----gttggtgtcttatagtcccattaattctttcatggtgtggatatataagttgctaataaatagttta 808  Q
    |||||| ||||||||||||||||     |||||||| ||||||| | |||||||| |||||||||||||||||| |||||||||| ||||||||    
T  19814557 aagcgtgaatctgcagcaattgaatagtttggtgtcatatagtctctttaattctctcatggtgtggatatataggttgctaatatatagttta 19814464  T

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Target: scaffold0657 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 521 - 808
Target Start/End: Complemental strand, 8572 - 8299
Alignment:
Q  521 tggtatcagagcaataatcctcggacaaatatttttggggtgggacgtatttgtatgacgcatgcttttgattgatgtttgagaatgatttgatccat-- 618  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |||||||||||| || |||||||||||| |||      
T  8572 tggtatcagagcaataatcctcggactaatatttttggggtgggacgtgtttttatgacgcatgc-tttgattgatgtctgtgaatgatttgattcattg 8474  T
Q  619 ttgnnnnnnnngtcttgatgcgttttctgttattaaattgaagatctaaatgtacttgtatatatatgacttcttgatgcttattttaattgaagatgtt 718  Q
    ||         |||||||    ||||||||||||||||||| ||||||||||||||||  ||||||||| |||                |||||||||||    
T  8473 ttattttctttgtcttga-catttttctgttattaaattgatgatctaaatgtacttg--tatatatgatttc----------------ttgaagatgtt 8393  T
Q  719 aagcgtaaatctgcagcaattga----gttggtgtcttatagtcccattaattctttcatggtgtggatatataagttgctaataaatagttta 808  Q
    |||||| ||||||||||||||||     |||||||| ||||||| | |||||||| |||||||||||||||||| |||||||||| ||||||||    
T  8392 aagcgtgaatctgcagcaattgaatagtttggtgtcatatagtctctttaattctctcatggtgtggatatataggttgctaatatatagttta 8299  T

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Target: chr3 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 708 - 808
Target Start/End: Complemental strand, 1203489 - 1203385
Alignment:
Q  708 ttgaagatgttaagcgtaaatctgcagcaattga----gttggtgtcttatagtcccattaattctttcatggtgtggatatataagttgctaataaata 803  Q
    ||||||||||||||||| ||||||||||||||||     |||||||| ||||||| | |||||||| |||||||||||||||||| |||||||||| |||    
T  1203489 ttgaagatgttaagcgtgaatctgcagcaattgaatagtttggtgtcatatagtctctttaattctctcatggtgtggatatataggttgctaatatata 1203390  T
Q  804 gttta 808  Q
    |||||    
T  1203389 gttta 1203385  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 641 - 695
Target Start/End: Complemental strand, 1203538 - 1203486
Alignment:
Q  641 ttttctgttattaaattgaagatctaaatgtacttgtatatatatgacttcttga 695  Q
    ||||||||||||||||||| ||||||||| |||||||||  ||||||||||||||    
T  1203538 ttttctgttattaaattgatgatctaaatttacttgtat--atatgacttcttga 1203486  T

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Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 521 - 618
Target Start/End: Complemental strand, 41951175 - 41951079
Alignment:
Q  521 tggtatcagagcaataatcctcggacaaatatttttggggtgggacgtatttgtatgacgcatgcttttgattgatgtttgagaatgatttgatccat 618  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||  ||| ||||| ||||||||||||||||  | || ||||| ||||||||||    
T  41951175 tggtataagagcaatagtcctcggacaaatattttt-gggtgggacgcttttatatgatgcatgcttttgattgagttgtgtgaatgttttgatccat 41951079  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 521 - 559
Target Start/End: Original strand, 7646713 - 7646751
Alignment:
Q  521 tggtatcagagcaataatcctcggacaaatatttttggg 559  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  7646713 tggtatcagagcaataatcctcggacaaatgtttttggg 7646751  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 567
Target Start/End: Complemental strand, 20600514 - 20600464
Alignment:
Q  521 tggtatcagagcaataatcctcggac----aaatatttttggggtgggacg 567  Q
    |||||||||||| |||||||||||||    |||||||||||||||||||||    
T  20600514 tggtatcagagcgataatcctcggacaaaaaaatatttttggggtgggacg 20600464  T

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