View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13199_low_10 (Length: 456)
Name: NF13199_low_10
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13199_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Complemental strand, 41538038 - 41537619
Alignment:
| Q |
20 |
aaaaaataaggtggggaaagcttaatacgaaaatgctagtataactactattcacttaaacagttttacgcggtcaaaaaacaccaatcaaatgtgattt |
119 |
Q |
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| T |
41538038 |
aaaaaataaggtggggaaagcttaatacgaaaatgctagtataactactattcacttaaacagttttacgcggtcaaaaaacaccaatcaaatgtaattt |
41537939 |
T |
|
| Q |
120 |
taaaatatttaattggtgtaaaaagttaactgcatcaaaactatttaaagatgatgtttttagcatagaaatagttgagtgcttttatatttttctcaaa |
219 |
Q |
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| T |
41537938 |
taaaatatttaattggtgtaaaaagttaactgcatcaaaactatttaaagatgatgtttttagcatagaaatagttgagtgcttttatatttttctcaaa |
41537839 |
T |
|
| Q |
220 |
gtaacatagtggttgaaatttcatcttaagatgaataagtgacgaatttagaatttaaatctcgattcatacttataaaaagcaatatctttaccaactt |
319 |
Q |
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| T |
41537838 |
gtaacatagtggttgaaatttcattttaagatgaataagtgacgaatttagaatttgaaccccaattcatatttataaaaagcaatatctttaccaactt |
41537739 |
T |
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| Q |
320 |
agatatacataaggatattagtgaactttgttatcgtatattaacaaaggtaggtagttcagtaaattaatagcaaggtgtgtggcctaaaagcgactga |
419 |
Q |
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||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |
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| T |
41537738 |
agatatacatacggatattaatgaactttattatcgtatattaacaaaggtaggtagttcagtaaattaatagtaaggtgtgtggcctaatagtgactga |
41537639 |
T |
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| Q |
420 |
aagtatattttacacaaaat |
439 |
Q |
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| T |
41537638 |
aagtatattttacacaaaat |
41537619 |
T |
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