View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13199_low_11 (Length: 434)
Name: NF13199_low_11
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13199_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 135 - 424
Target Start/End: Original strand, 8042038 - 8042327
Alignment:
| Q |
135 |
caactttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacc |
234 |
Q |
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| T |
8042038 |
caactttttccaataaattattgtcactgttattataatcttaaaaataaacaatcttaccttatggtttttgatttgttggggtgtgattggcggaacc |
8042137 |
T |
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| Q |
235 |
caattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacggaaacttccattaccta |
334 |
Q |
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| T |
8042138 |
caattgtgatttatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttccgagtctgtaaaacacacacggaaacttccattcccta |
8042237 |
T |
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| Q |
335 |
aatcttcgctaacgcagccttcccaccacctgtgtttccggaacgcctccactttgtccctgatcttcacttcccaatcatcgctctctg |
424 |
Q |
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| T |
8042238 |
aatcttcaataacgcggccttcccaccaccgttgtttccggaaagcctccaccttgtcgccgatcttcacttcccaatcatcgctctctg |
8042327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 135 - 302
Target Start/End: Original strand, 8036609 - 8036776
Alignment:
| Q |
135 |
caactttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacc |
234 |
Q |
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| T |
8036609 |
caactttttccaataaattattgtcactgttattataatcttaaaaataaactatcttaccttatggtttttgatttgttggggtgtgactggcggaacc |
8036708 |
T |
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| Q |
235 |
caattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtc |
302 |
Q |
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| T |
8036709 |
caattgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacaccatctcttccaagtc |
8036776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 219 - 416
Target Start/End: Complemental strand, 8410509 - 8410312
Alignment:
| Q |
219 |
tgtgattggaggaacccaattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacgg |
318 |
Q |
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| T |
8410509 |
tgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtcttttggaaacacaatctctcctgagtctgtaaaacacacacga |
8410410 |
T |
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| Q |
319 |
aaacttccattacctaaatcttcgctaacgcagccttcccaccacctgtgtttccggaacgcctccactttgtccctgatcttcacttcccaatcatc |
416 |
Q |
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| T |
8410409 |
aaacttccattccctaaatcttcgctaacacggccttcccaccacctgtgtttccggaacgcctccactttgtcgccgatcttcacttcccaatcatc |
8410312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 140 - 420
Target Start/End: Original strand, 9139681 - 9139946
Alignment:
| Q |
140 |
ttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacccaatt |
239 |
Q |
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| T |
9139681 |
ttttccaacaaattattgctactgttattataatcttaaaaataaactaccttaccttatggttt---------------gtgattgggggaacccaatt |
9139765 |
T |
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| Q |
240 |
gtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacggaaacttccattacctaaatct |
339 |
Q |
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|||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| | || |||||||| ||||||||| |
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| T |
9139766 |
gtgattaatccactggcgatgaatcctaagaaggtcttttggaaacaccatctcttccgagtctgtaaaacacacaagaaatcttccattccctaaatct |
9139865 |
T |
|
| Q |
340 |
tcgctaacgcagccttcccaccacctgtgtttccggaacgcctccactttgtccctgatcttcacttcccaatcatcgctc |
420 |
Q |
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| T |
9139866 |
gcgctaacgcggccttcccaccaccggtgttttcggaatgcctccaccttgtcgccgatcttcacttcccaataatcgctc |
9139946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 139 - 296
Target Start/End: Complemental strand, 8416211 - 8416069
Alignment:
| Q |
139 |
tttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacccaat |
238 |
Q |
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| T |
8416211 |
tttttccaacaaattattgttactgttattataatcttaaaaataaactatcttaccttatggttt---------------gtgattgggggaacccaat |
8416127 |
T |
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| Q |
239 |
tgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttc |
296 |
Q |
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| T |
8416126 |
tgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttc |
8416069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 8036776 - 8036848
Alignment:
| Q |
352 |
ccttcccaccacctgtgtttccggaacgcctccactttgtccctgatcttcacttcccaatcatcgctctctg |
424 |
Q |
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| T |
8036776 |
ccttcccaccacctgtgtttccggaacgcctccactttgtccctgatcttcacttcccaatcatcgctctctg |
8036848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8036475 - 8036541
Alignment:
| Q |
1 |
tcaggcaactcaataatcctattttcctgccgctgtcgcttcagttcctggtttgataaacaacttg |
67 |
Q |
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| T |
8036475 |
tcaggcaactcactaatcctattttcctgccgctgtcgcttcagttcctggttggataaacaacttg |
8036541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 8416353 - 8416287
Alignment:
| Q |
1 |
tcaggcaactcaataatcctattttcctgccgctgtcgcttcagttcctggtttgataaacaacttg |
67 |
Q |
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| T |
8416353 |
tcaggcaactcactaatcctattttcccgccgctgtcgcttcagttcctggttggataaacaacttg |
8416287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8041892 - 8041939
Alignment:
| Q |
1 |
tcaggcaactcaataatcctattttcctgccgctgtcgcttcagttcc |
48 |
Q |
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| T |
8041892 |
tcaggcaaatcactaatcctatcttcctgccgctgtcgcttcagttcc |
8041939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 8359968 - 8360036
Alignment:
| Q |
201 |
gtttttgatttgttggggtgtgattggaggaacccaattgtgatttatccactggcgttgaaccctaag |
269 |
Q |
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| T |
8359968 |
gtttttgagttgttggtttgtgattcggggaacccaattgtgattaatccatttacgatgaaccctaag |
8360036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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