View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13199_low_17 (Length: 303)
Name: NF13199_low_17
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13199_low_17 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 25978962 - 25978667
Alignment:
| Q |
12 |
atgaacctaaacaagaaaaggagagatcaattaagaagaaaagcaaccttgctgctgcagttgctgtggaagatgttatacctttgctgttgttgcgtgc |
111 |
Q |
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| T |
25978962 |
atgaacctaaacaagaaaaggagagatcaattaagaagaaaagcaaccttgctgctgcagttgctgtggaagatgttatacctttgctgttgttgcgtgc |
25978863 |
T |
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| Q |
112 |
aattgaagaatttccaatgcactcaaagaagttgccttggttcggaaggcactctatgatgccgatgcgttggagtaagagcatg----tattgccgtgg |
207 |
Q |
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| T |
25978862 |
aattgaagaatttccaatgcactcaaagaagttgccttggttcggaaggcactctatgatgccgatgcgttggagtaagagcatgtatatattgccgtgg |
25978763 |
T |
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| Q |
208 |
tattaagaagtgctgaaaaaggagccaccaaaaactctcggatttggaagaatgttaaacccttcttcgagtggcttcagagtgcaattcagagac |
303 |
Q |
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| T |
25978762 |
tattaagaagtgctgaaaaaggagccaccaaaaactctcggatttggaagaatgttaaacccttcttcgagtggcttcagagtgcgattcagagac |
25978667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 25973607 - 25973312
Alignment:
| Q |
12 |
atgaacctaaacaagaaaaggagagatcaattaagaagaaaagcaaccttgctgctgcagttgctgtggaagatgttatacctttgctgttgttgcgtgc |
111 |
Q |
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| T |
25973607 |
atgaacctaaacaagagaaggataaatcaattaagaggaagagcaaccttgctgctgcatttgctgtggaagaggttgcgcctttgttgttgctatgtgc |
25973508 |
T |
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| Q |
112 |
aattgaagaatttccaatgcact--------caaagaagttgccttggttcggaaggcactctatgatgccgatgcgttggagtaagagcatgtattgcc |
203 |
Q |
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| T |
25973507 |
aattgaggaattaccaatgtgcttgaggtctcaaggaagttgccttgtttctgaaggcactctacaatgctgatgtgttggaggaagagcgtgtatta-- |
25973410 |
T |
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| Q |
204 |
gtggtattaagaagtgctgaaaaaggagccaccaaaaactctcggatttggaagaatgttaaacccttcttcgagtggcttcagagtgcaattcagagac |
303 |
Q |
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| T |
25973409 |
gtggtgtcatgaagtgctgaaa--ggagtcatgaagaactctcagatttggaagaatgttaaacccttcttcgagtggcttcagagtgcgaatcagagac |
25973312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 39 - 293
Target Start/End: Original strand, 31829611 - 31829879
Alignment:
| Q |
39 |
caattaagaagaaaagcaaccttgctgctgcagttgctgtggaagatgttatacctttgctgttgttgcgtgcaattgaagaattt-------------- |
124 |
Q |
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| T |
31829611 |
caattaagaagaagaattaccttgctgctgcagttgctgtggaagagggtatgccgttgctgttgctgcgtgcaattgaggaattttcttgcaagtccac |
31829710 |
T |
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| Q |
125 |
--ccaatgcactcaaagaagttgccttggttcggaaggcactctatgatgccgatgcgttggagtaagagcatgtattgccgtggtattaagaagtgctg |
222 |
Q |
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| T |
31829711 |
ttccaatgcactcaaggaagttgccctggttctgaaggcactctatgatgctgatgcgctggaggaagagcacatattgcagtggtatcaagaagggctg |
31829810 |
T |
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| Q |
223 |
aaaaaggagccaccaaaaactctcggatttggaagaatgttaaacccttcttcgagtggcttcagagtgca |
293 |
Q |
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| T |
31829811 |
--aaaggagacaccaaaaatgctcagatttggaagaatgtgaaacccttcattgaatggcttcagagtgca |
31829879 |
T |
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