View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13199_low_2 (Length: 641)
Name: NF13199_low_2
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13199_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 13889992 - 13889693
Alignment:
| Q |
18 |
acatttggggctggtgaaactgcaacaattaaggttaaagtacttgagaatggtgataagattgaccnnnnnnn-ttccatctcatacttaatgtcaatg |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13889992 |
acatttagggctggtgaaactgcaacaattaaggttaaagtacttgagaatggtgataagattgacaaaaaaaaattccatctcatacttaatgtcaatg |
13889893 |
T |
|
| Q |
117 |
gaaaggatggaaatagttcctatgtatccaccgtgttgtcgaatttcgaaggagattttgataattggaagatttccttcactcctattagggtcggatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13889892 |
gaaaggatggaaatagttcctatgtatccaccgtgttgtcgaatttcaaaggagattttgataattggaagatttccttcactcctattagggtcggatt |
13889793 |
T |
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| Q |
217 |
gttcaatgtgctcgttagtgaggatcgttacaaagtttttgattcgtcgttgcattttcaagttgaaccaggtaaaatcaaaacccttacttaactggta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13889792 |
gttcaatgtgctcgttagtgaggatcgttacaaagtttttgattcgtcgttgcattttcaagttgaaccaggtaaaatcaaaacccttacttaactggta |
13889693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 14030117 - 14029818
Alignment:
| Q |
18 |
acatttggggctggtgaaactgcaacaattaaggttaaagtacttgagaatggtgataagattgaccnnnnnnn-ttccatctcatacttaatgtcaatg |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14030117 |
acatttagggctggtgaaactgcaacaattaaggttaaagtacttgagaatggtgataagattgacaaaaaaaaattccatctcatacttaatgtcaatg |
14030018 |
T |
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| Q |
117 |
gaaaggatggaaatagttcctatgtatccaccgtgttgtcgaatttcgaaggagattttgataattggaagatttccttcactcctattagggtcggatt |
216 |
Q |
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| T |
14030017 |
gaaaggatggaaatagttcctatgtatccaccgtgttgtcgaatttcaaaggagattttgataattggaagatttccttcactcctattagggtcggatt |
14029918 |
T |
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| Q |
217 |
gttcaatgtgctcgttagtgaggatcgttacaaagtttttgattcgtcgttgcattttcaagttgaaccaggtaaaatcaaaacccttacttaactggta |
316 |
Q |
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| T |
14029917 |
gttcaatgtgctcgttagtgaggatcgttacaaagtttttgattcgtcgttgcattttcaagttgaaccaggtaaaatcaaaacccttacttaactggta |
14029818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 412 - 626
Target Start/End: Complemental strand, 13889634 - 13889417
Alignment:
| Q |
412 |
attctcatatcgaaatgcattttctctagggtattt-agttgctattttggctatttgagtaagacttgcatgaatgaatgc--ttactaagttgaattg |
508 |
Q |
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| T |
13889634 |
attctcatatcgaactgcattttctctagggtattttagttgctattttggctatttgagtaagacttgcatgaatgaatgcatttactaagttgaattg |
13889535 |
T |
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| Q |
509 |
gttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaaggg |
608 |
Q |
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| T |
13889534 |
gttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaaggg |
13889435 |
T |
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| Q |
609 |
aacatgtatccgtctgtg |
626 |
Q |
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| T |
13889434 |
aacatgtatccgtctgtg |
13889417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 412 - 626
Target Start/End: Complemental strand, 14029759 - 14029542
Alignment:
| Q |
412 |
attctcatatcgaaatgcattttctctagggtattt-agttgctattttggctatttgagtaagacttgcatgaatgaatgc--ttactaagttgaattg |
508 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14029759 |
attctcatatcgaactgcattttctctagggtattttagttgctattttggctatttgagtaagacttgcatgaatgaatgcatttactaagttgaattg |
14029660 |
T |
|
| Q |
509 |
gttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaaggg |
608 |
Q |
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| T |
14029659 |
gttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaaggg |
14029560 |
T |
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| Q |
609 |
aacatgtatccgtctgtg |
626 |
Q |
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| T |
14029559 |
aacatgtatccgtctgtg |
14029542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 13889682 - 13889632
Alignment:
| Q |
302 |
cttacttaactggtagaaagacgagcacgctagtgtgtgtctatctgtatt |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13889682 |
cttacttaactggtagaaagacgagcacgctagtgtgtgtctatctgtatt |
13889632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 14029807 - 14029757
Alignment:
| Q |
302 |
cttacttaactggtagaaagacgagcacgctagtgtgtgtctatctgtatt |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14029807 |
cttacttaactggtagaaagacgagcacgctagtgtgtgtctatctgtatt |
14029757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 7691252 - 7690899
Alignment:
| Q |
18 |
acatttggggctggtgaaactgcaacaattaaggttaaagtacttgagaatggtgataagattgaccnnnnnnntt-ccatctcatacttaatgtcaatg |
116 |
Q |
| |
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|||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |
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| T |
7691252 |
acatttagggccggtgaaactgcaaccattaaggttaaagtacttgagaatggtgataaaattgacaaaaataatttccatctcatacttaatgtcaatg |
7691153 |
T |
|
| Q |
117 |
gaaaggatggaaatagttcctatgtatccaccgtgttgtcgaatttcgaaggagattttgataattggaagatttccttcactcctattagggtcggatt |
216 |
Q |
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||||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| | |
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| T |
7691152 |
gaaaggaagggaatagttcctatgtatcaacagtgttgtcgaatttcgaaggagattttgatcattggaagatttccttcactcctattaaggttggact |
7691053 |
T |
|
| Q |
217 |
gttcaatgtgctcgttagtgaggatcgttacaaagtttttgattcgtcgttgcattttcaagttgaaccaggtaaaatcaaaaccc-ttacttaactggt |
315 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||| ||| |
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| T |
7691052 |
gttcaatgtgctcattagtgaggatcgctacaaagtttttgattcatcgttgcatttccaagttgaaccaggtataatcaaaaccctttacttatttggc |
7690953 |
T |
|
| Q |
316 |
agaaagacgagcacgctagtgtgtgtctatctgtatttctttgtgcgtatttta |
369 |
Q |
| |
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|||||||| |||| ||||||||| ||||| |||||||||||||||||||| |
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| T |
7690952 |
agaaagacaagcattttagtgtgtgcttatctacatttctttgtgcgtatttta |
7690899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 427 - 619
Target Start/End: Complemental strand, 7690677 - 7690487
Alignment:
| Q |
427 |
tgcattttctctagggtattt-agttgctattttggctatttgagtaagacttgcatgaatgaatgcttactaagttgaattggttagtgcatatcatga |
525 |
Q |
| |
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|||| ||||| |||||||||| |||||||| |||||| |||||||||||| || |||||||||| | ||||||||||||| ||| || |||||||||| |
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| T |
7690677 |
tgcaatttctttagggtattttagttgctaatttggcgatttgagtaagatgtgtatgaatgaat--tcactaagttgaattagttggttcatatcatga |
7690580 |
T |
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| Q |
526 |
tgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaagggaacatgtatcc |
619 |
Q |
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||| |||||||||||||| ||||||| |||| ||| ||| |||||||| || || ||||| |||| ||||| |||||||||||||||||| |
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| T |
7690579 |
tgt-tatacataatgtaggttgattcagtttcggtacgtgttcattaattactgttttatgttaatattgtatgactgaagggaacatgtatcc |
7690487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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