View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13199_low_20 (Length: 267)

Name: NF13199_low_20
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13199_low_20
NF13199_low_20
[»] chr2 (12 HSPs)
chr2 (11-267)||(8380008-8380264)
chr2 (30-219)||(30394060-30394249)
chr2 (30-266)||(30383931-30384167)
chr2 (53-267)||(23767675-23767889)
chr2 (43-267)||(23784190-23784414)
chr2 (53-267)||(23796844-23797058)
chr2 (12-202)||(30424085-30424275)
chr2 (39-219)||(30482837-30483017)
chr2 (12-219)||(30468078-30468285)
chr2 (39-219)||(30436363-30436543)
chr2 (12-219)||(30475207-30475414)
chr2 (48-202)||(30430154-30430308)
[»] chr5 (1 HSPs)
chr5 (23-219)||(41628323-41628519)
[»] chr8 (4 HSPs)
chr8 (40-181)||(15860290-15860431)
chr8 (75-181)||(15852929-15853035)
chr8 (40-164)||(15846118-15846242)
chr8 (40-180)||(15866678-15866818)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 267
Target Start/End: Complemental strand, 8380264 - 8380008
Alignment:
Q  11 cacagatcatggcaccaagtttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatg 110  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||    
T  8380264 cacagatcatggcaccaagtttcctcacaagttgcattgatatgattagcaaatgggagtcaacgttgtcatcagatggatcaggtgaaatagacatatg 8380165  T
Q  111 gccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8380164 gccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaa 8380065  T
Q  211 ggtgaacttgttatgaaaaatctagtgaaatctttaatccctttatggaggtaagac 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8380064 ggtgaacttgttatgaaaaatctagtgaaatctttaatccctttatggaggtaagac 8380008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 30394060 - 30394249
Alignment:
Q  30 tttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttg 129  Q
    |||| |||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  30394060 tttcttcacaagttgcaatgatatgattagcaaatgggaggaaatgttgtcttcagatggatcatgtgaaatagacgtatggccttccctgcagaatttg 30394159  T
Q  130 acaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 219  Q
     ||||||||| |||||||||||  || |||||||||||||| ||||||||||||||||||||| | |||||||||||||||| |||||||    
T  30394160 gcaagtgatgctatttctcgaactgcgtttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaactt 30394249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 30 - 266
Target Start/End: Original strand, 30383931 - 30384167
Alignment:
Q  30 tttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttg 129  Q
    |||| |||||||||||| |||| |||||| ||||||||||  ||  |||||||||||||||||| |||||||||| |||||||||||||| || ||||||    
T  30383931 tttcttcacaagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttg 30384030  T
Q  130 acaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaacttgttatgaaaa 229  Q
     ||||||||| ||||||||||| ||||||||||||||| || ||||||||||||||||||||| | |||||||||||||||| ||||||| |  |||||     
T  30384031 gcaagtgatgctatttctcgaaccgcatttggaagtagctatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaacttatagtgaaag 30384130  T
Q  230 atctagtgaaatctttaatccctttatggaggtaaga 266  Q
     | ||  ||||||| | ||||||||||||| ||||||    
T  30384131 ttgtaacgaaatctatcatccctttatggatgtaaga 30384167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 53 - 267
Target Start/End: Original strand, 23767675 - 23767889
Alignment:
Q  53 tgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaa 152  Q
    |||||||||| ||||| | ||| ||||||||| |||||||   |||||||||||||||||||||||| ||||  |||||||||||||||||  ||||       
T  23767675 tgattagcaattgggaagaaacgttgtcttcaaatggatcctctgaaatagacatatggccttcccttcagagcttgacaagtgatgttatcgctcgttc 23767774  T
Q  153 cgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaacttgttatgaaaaatctagtgaaatctttaatccct 252  Q
      |||||||||||||||| |||||||||| || | ||||| | ||||||| |||||||||||||||| | |||||||||||| |||||||||||||||||    
T  23767775 gtcatttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttataatgaaaaatctaatgaaatctttaatccct 23767874  T
Q  253 ttatggaggtaagac 267  Q
    |||||||||||||||    
T  23767875 ttatggaggtaagac 23767889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 43 - 267
Target Start/End: Complemental strand, 23784414 - 23784190
Alignment:
Q  43 tgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgtta 142  Q
    |||| |||| |||||||||| |||||   ||  ||||||||| |||||||| ||||||| ||| ||||||||||||| ||||  ||||||||||||||||    
T  23784414 tgcaatgatttgattagcaattgggaaaaaatgttgtcttcaaatggatcatgtgaaatggacgtatggccttcccttcagagcttgacaagtgatgtta 23784315  T
Q  143 tttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaacttgttatgaaaaatctagtgaaatc 242  Q
    |  ||||     |||||||||||||||| |||||||||| || | ||||| | ||||||| |||||||||||||||| | |||||||||||| |||||||    
T  23784314 tcgctcgttcgtcatttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttataatgaaaaatctaatgaaatc 23784215  T
Q  243 tttaatccctttatggaggtaagac 267  Q
    |||||||||||||||||||||||||    
T  23784214 tttaatccctttatggaggtaagac 23784190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 53 - 267
Target Start/End: Original strand, 23796844 - 23797058
Alignment:
Q  53 tgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaa 152  Q
    |||||||||| ||||| | ||| |||||||||  |||| |   |||||||||||||||||||||||| ||||  |||||||||||||||||  ||||       
T  23796844 tgattagcaattgggaagaaacgttgtcttcaagtggagcctctgaaatagacatatggccttcccttcagagcttgacaagtgatgttatcgctcgttc 23796943  T
Q  153 cgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaacttgttatgaaaaatctagtgaaatctttaatccct 252  Q
      |||||||||||||||| |||||||||| || | ||||| | ||||||| |||||||||||||||| | |||||||||||| |||||||||||||||||    
T  23796944 gtcatttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttataatgaaaaatctaatgaaatctttaatccct 23797043  T
Q  253 ttatggaggtaagac 267  Q
    |||||||||||||||    
T  23797044 ttatggaggtaagac 23797058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 30424085 - 30424275
Alignment:
Q  12 acagatcatggcaccaagtttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatgg 111  Q
    ||||||||||  |||||  | ||||| |||||||  |||| |||||||||||||||||  ||  ||| |||||||||||||| ||||||| ||| |||||    
T  30424085 acagatcatgttaccaatatacctcaaaagttgcgatgatctgattagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggacgtatgg 30424184  T
Q  112 ccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaa 202  Q
    |||| ||| || |||||| | ||||||||||||||||||   ||||||||||||||||| ||||| ||||||||||||||| | |||||||    
T  30424185 cctttccttcaaaatttggcgagtgatgttatttctcgagctgcatttggaagtagttatgaagagggaaaaagaatatttcaacttcaaa 30424275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 30482837 - 30483017
Alignment:
Q  39 aagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgat 138  Q
    |||||||| ||||||||||||||||||||||| ||  || || | |||||||||| ||||||| ||  ||||||||||| | || |||||| | ||||||    
T  30482837 aagttgcaatgatatgattagcaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgat 30482936  T
Q  139 gttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 219  Q
    |||||| ||||||  ||||||||||||||||| |||||||||| || ||||||| | |||||||  ||||||| |||||||    
T  30482937 gttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaactt 30483017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 30468078 - 30468285
Alignment:
Q  12 acagatcatggcaccaagtttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatgg 111  Q
    ||||||||||  |||||  |||| || |||||||  |||| |||||||||||||||||  ||  ||||| |||||||||||| ||||||| ||| |||||    
T  30468078 acagatcatgttaccaatattccacaaaagttgcgatgatctgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatgg 30468177  T
Q  112 ccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaag 211  Q
    |||| ||| || |||||  | ||||||||||||||||||   || |||||||||||||| ||||| ||||||||||||||| | |||||||  || ||||    
T  30468178 cctttccttcaaaattttgccagtgatgttatttctcgagcagcgtttggaagtagttatgaagagggaaaaagaatatttcaacttcaaaccgaacaag 30468277  T
Q  212 gtgaactt 219  Q
     |||||||    
T  30468278 ctgaactt 30468285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 30436363 - 30436543
Alignment:
Q  39 aagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgat 138  Q
    |||||||  |||| |||||||||||||||||  ||  ||||| |||||||||||| ||||||| ||| ||||||||| ||| || |||||| | ||||||    
T  30436363 aagttgcgatgatttgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttggccagtgat 30436462  T
Q  139 gttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 219  Q
     |||||||||||   || |||||||||||||| ||||| ||||||||||||||| | |||||||  || |||| |||||||    
T  30436463 cttatttctcgagcagcgtttggaagtagttatgaagagggaaaaagaatatttcaacttcaaaccgaacaagctgaactt 30436543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 30475207 - 30475414
Alignment:
Q  12 acagatcatggcaccaagtttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatgg 111  Q
    ||||||||||  ||||| |||| ||| ||||||   |||| |||||| ||||||||||  ||  ||||| |||||||||||| ||||| | ||  | |||    
T  30475207 acagatcatgttaccaattttcttcaaaagttgtgatgatttgattaccaaatgggagagaatgttgtcatcagatggatcatgtgaattggatgtttgg 30475306  T
Q  112 ccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaag 211  Q
    |||| ||| || |||||| | ||||||||||||||| |||  ||||||||||||||||| ||||| ||||||||||||||| | |||||||  |||||||    
T  30475307 cctttccttcaaaatttggcgagtgatgttatttctagaacagcatttggaagtagttatgaagagggaaaaagaatatttcaacttcaaatcgagcaag 30475406  T
Q  212 gtgaactt 219  Q
     |||||||    
T  30475407 ctgaactt 30475414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 30430154 - 30430308
Alignment:
Q  48 tgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttct 147  Q
    |||| |||||||||||||||||  ||  ||| |||||||||||||| ||||||| ||  ||||||||| ||| || |||||  |||| ||||||||||||    
T  30430154 tgatctgattagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggaagtatggcctttccttcaaaatttagcaagagatgttatttct 30430253  T
Q  148 cgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaa 202  Q
    |||   ||||||||||||||||| ||||| ||||||||||||||| | |||||||    
T  30430254 cgagctgcatttggaagtagttatgaagagggaaaaagaatatttcaacttcaaa 30430308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 41628519 - 41628323
Alignment:
Q  23 caccaagtttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctaca 122  Q
    |||||| |||| ||||||||||||  ||| | ||||| |||||||||| ||  |||||| ||||||||||| |||||||||| |||||||||||||| ||    
T  41628519 caccaactttcttcacaagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagatatatggccttcccttca 41628420  T
Q  123 gaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 219  Q
    ||||||| | |||||||||||||||||||   |||| ||||||||||| |||||||||| |||||||||| | |||||||  ||||||| |||||||    
T  41628419 gaatttggcgagtgatgttatttctcgaacaacattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactt 41628323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 15860431 - 15860290
Alignment:
Q  40 agttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatg 139  Q
    ||||||| ||| ||||| ||||||||| ||| |  |||||| ||||||||| || |||| || ||  | ||||||||||| |||||||| ||  ||||||    
T  15860431 agttgcaatgaaatgataagcaaatggaagggattattgtcatcagatggaacatgtgagattgatgtttggccttcccttcagaattttacctgtgatg 15860332  T
Q  140 ttatttctcgaaacgcatttggaagtagttacgaagaaggaa 181  Q
    | |||||||| |  ||||||||||| || |||| ||||||||    
T  15860331 taatttctcggacagcatttggaagcagctacgcagaaggaa 15860290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 15853035 - 15852929
Alignment:
Q  75 attgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaa 174  Q
    |||||| ||||||||| || |||| || ||  | ||||||| ||| |||||||||||  ||||||| |||||||| |  ||||||||||| || |||| |    
T  15853035 attgtcatcagatggaacatgtgagattgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgca 15852936  T
Q  175 gaaggaa 181  Q
    |||||||    
T  15852935 gaaggaa 15852929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 15846242 - 15846118
Alignment:
Q  40 agttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatg 139  Q
    ||||||| ||| ||||| ||||||||| ||| |  |||||| ||||||||| || ||||  | ||  | ||||||| ||| |||||||||||  ||||||    
T  15846242 agttgcaatgaaatgataagcaaatggaagggattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaatttgacctgtgatg 15846143  T
Q  140 ttatttctcgaaacgcatttggaag 164  Q
    | |||||| |||  |||||||||||    
T  15846142 taatttctagaacagcatttggaag 15846118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 15866818 - 15866678
Alignment:
Q  40 agttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatg 139  Q
    ||||||| ||| |||||||| |||||| ||| |  |||||| ||||||||| || ||||  | ||  | ||||||| ||| |||||||| ||  ||||||    
T  15866818 agttgcaatgaaatgattagtaaatggaaggaactattgtcatcagatggaacatgtgaggttgatgtttggcctttccttcagaattttacctgtgatg 15866719  T
Q  140 ttatttctcgaaacgcatttggaagtagttacgaagaagga 180  Q
    | |||||||| |  ||||||||||| || |||| |||||||    
T  15866718 taatttctcggacggcatttggaagcagctacgcagaagga 15866678  T

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