View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13199_low_21 (Length: 253)
Name: NF13199_low_21
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13199_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 51030587 - 51030823
Alignment:
| Q |
6 |
agcagcacagacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttt |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51030587 |
agcaacacaaacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttt |
51030686 |
T |
|
| Q |
106 |
tctatgaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaagca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51030687 |
tctatgaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaagca |
51030786 |
T |
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| Q |
206 |
aatgaagtacacaatcatttca-tttttagattaata |
241 |
Q |
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|||||||| ||||||||||||| |||||||||||||| |
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| T |
51030787 |
aatgaagtgcacaatcatttcattttttagattaata |
51030823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 51063339 - 51063575
Alignment:
| Q |
6 |
agcagcacagacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttt |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51063339 |
agcaacacaaacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttt |
51063438 |
T |
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| Q |
106 |
tctatgaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaagca |
205 |
Q |
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| T |
51063439 |
tctatgaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaagca |
51063538 |
T |
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| Q |
206 |
aatgaagtacacaatcatttca-tttttagattaata |
241 |
Q |
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|||||||| ||||||||||||| |||||||||||||| |
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| T |
51063539 |
aatgaagtgcacaatcatttcattttttagattaata |
51063575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 51068908 - 51069080
Alignment:
| Q |
6 |
agcagcacagacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttt |
105 |
Q |
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|||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || || |||||||| ||||| ||| |
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| T |
51068908 |
agcaacacaaacatttcctttactaatatttcccattataagctcccaaggatgtctatatctcaatggagctgaatggaaagcatctaaatctgttttt |
51069007 |
T |
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| Q |
106 |
tctatgaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggt |
178 |
Q |
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| T |
51069008 |
tctatgatagatataacattacttggcatattctctagcttgtttaacacatattgcttcagtttagcagggt |
51069080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 40618068 - 40617876
Alignment:
| Q |
11 |
cacagacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttttctat |
110 |
Q |
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|||| ||||| ||||| |||||||||||||| || |||||||| |||| ||||| ||||||||||||||| || || ||||||| || ||||||||||| |
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| T |
40618068 |
cacaaacatttcctttgctaatatttcccattatgagctcccatggatttctatatctcaatggagctgaatggaaagcatctatctcagtgttttctat |
40617969 |
T |
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| Q |
111 |
gaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaag |
203 |
Q |
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|||| | |||||||||||||||| ||||||||||| ||||| ||||||| ||| || ||||| ||||||||| ||||||||| |||||||| |
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| T |
40617968 |
gaaagatctaacatcacttggcattttctctaacttctttaatacatattctttcagtttagccgggtcttgtagtagctctttttctgtaag |
40617876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 51034865 - 51035061
Alignment:
| Q |
6 |
agcagcacagacattgcctttactaatatttcccatcataagctcccaaggatgtctatgtctcaatggagctgattgaaatgcatctaattctgtgttt |
105 |
Q |
| |
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|||| |||| |||||| ||||||||| |||||||| || || |||||||||||||||| ||||||||||||||| || || |||||||| | |||||| |
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| T |
51034865 |
agcaacacaaacattgtttttactaatgtttcccattatgagttcccaaggatgtctatatctcaatggagctgaatgtaaagcatctaaattagtgttt |
51034964 |
T |
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| Q |
106 |
tctatgaaatgtttaacatcacttggcatcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaa |
202 |
Q |
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| T |
51034965 |
tctatgataaatctaacataacttggaatctcctctagcttgcttaacacatattgttttagtttagcaggatcctctgctagctctttatctgtaa |
51035061 |
T |
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