View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13199_low_22 (Length: 244)
Name: NF13199_low_22
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13199_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 51031013 - 51031241
Alignment:
| Q |
1 |
ttcaccttggttaataggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51031013 |
ttcaccttggttaataggagtccatgtgaaaaaccaataaacacttttctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatg |
51031112 |
T |
|
| Q |
101 |
aacattggttcaaagttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgatgcttccttgaaccctaaccattttgcca |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51031113 |
aacattggttcaaggttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgaggcttccttgaaccctaaccattttgcca |
51031212 |
T |
|
| Q |
201 |
ccacagagtttactccatcacatccaatc |
229 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
51031213 |
ccacagagtttactccatcacacccaatc |
51031241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 51063765 - 51063993
Alignment:
| Q |
1 |
ttcaccttggttaataggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51063765 |
ttcaccttggttaataggagtccatgtgaaaaaccaataaacacttttctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatg |
51063864 |
T |
|
| Q |
101 |
aacattggttcaaagttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgatgcttccttgaaccctaaccattttgcca |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51063865 |
aacattggttcaaggttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgaggcttccttgaaccctaaccattttgcca |
51063964 |
T |
|
| Q |
201 |
ccacagagtttactccatcacatccaatc |
229 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
51063965 |
ccacagagtttactccatcacacccaatc |
51063993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40616989 - 40616768
Alignment:
| Q |
1 |
ttcaccttggttaataggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatg |
100 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||||| ||||||| ||||||| |||||| | ||| ||||| ||||||||||| |||||||| |||||| |
|
|
| T |
40616989 |
ttcaccttggcttgtaggagtccatgtaaaaaaccagtaaacacccttctcattacatggaagagctccagctctaaaacctttaccaaagtattgcatg |
40616890 |
T |
|
| Q |
101 |
aacattggttcaaagttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgatgcttccttgaaccctaaccattttgcca |
200 |
Q |
| |
|
||||||||||| || | ||| |||||| |||||| ||| || |||| |||||||||||||||||| || || |||||||| |||| ||| ||||| | |
|
|
| T |
40616889 |
aacattggttccaactcatgattggtctcgcactctgaatagcccctggctgcatatctccctgtgtaagaggcctccttgaagcctagccactttgcta |
40616790 |
T |
|
| Q |
201 |
ccacagagtttactccatcaca |
222 |
Q |
| |
|
||| |||||| ||||||||||| |
|
|
| T |
40616789 |
ccaaagagttaactccatcaca |
40616768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 51035254 - 51035482
Alignment:
| Q |
1 |
ttcaccttggttaataggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatg |
100 |
Q |
| |
|
||||||||| || ||||||| |||||||||||||||||| ||| || ||||||||||| | ||| ||| | | |||||||||||| ||||||| | || |
|
|
| T |
51035254 |
ttcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactccttg |
51035353 |
T |
|
| Q |
101 |
aacattggttcaaagttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgatgcttccttgaaccctaaccattttgcca |
200 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||| ||||||| || ||| |||| ||| | ||| || || |||||||| |||||||||||||| | |
|
|
| T |
51035354 |
aacattggttcaagttcgtgagtgtccttcaactctacataacccctagttacataactctccacgtaagaggcctccttgaagcctaaccattttgcta |
51035453 |
T |
|
| Q |
201 |
ccacagagtttactccatcacatccaatc |
229 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
51035454 |
ccacagagtttactccatcacacccaatc |
51035482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 51069240 - 51069449
Alignment:
| Q |
16 |
aggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatgaacattggttcaaag |
115 |
Q |
| |
|
||||||||| ||||||||||| ||||||| ||||||| ||| || | | | ||||| ||||||||||||||| || ||||||| | ||| || ||||| |
|
|
| T |
51069240 |
aggagtccaagtgaaaaaccagtaaacacctttctcatgacaaggaacaactccagctctaaaacctttgccatagaactgcataagcataggctcaaaa |
51069339 |
T |
|
| Q |
116 |
ttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgtatgatgcttccttgaaccctaaccattttgccaccacagagtttactc |
215 |
Q |
| |
|
||||| || | | ||||||||| |||| ||| || ||||||||||||| || || |||||||| |||||||| ||||| ||||||||||| | || |
|
|
| T |
51069340 |
ctgtgattgttttccaactctgcgaaacccctgattccatatctccctgtataactggcctccttgaagcctaaccactttgcaaccacagagttgattc |
51069439 |
T |
|
| Q |
216 |
catcacatcc |
225 |
Q |
| |
|
|||||||||| |
|
|
| T |
51069440 |
catcacatcc |
51069449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University