View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13199_low_3 (Length: 617)
Name: NF13199_low_3
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13199_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 18 - 609
Target Start/End: Complemental strand, 44475971 - 44475392
Alignment:
| Q |
18 |
aaaagcttctttgcatcttcatctactgtaccatctggtcctccccctcatcatcatgtccataagtcagtgttaagtatttatatgagatcaccctttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44475971 |
aaaagcttctttgcatcttcatctactgtaccatctggtcctccccctcatcatcatgtccataagtcagtgttaagtatttatatgagatcaccctttc |
44475872 |
T |
|
| Q |
118 |
tcattgtcctgatctctgcataggaaaaatgaacatgagattagatgtcataaacacatagtacatgtgatgcacaaattcataaaatatatacatgtat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44475871 |
tcattgtcctgatctctgcataggaaaaatgaacatgagattagatgtcataaacacatagtacatgtgatgcacaaattcataaaatatatacatgta- |
44475773 |
T |
|
| Q |
218 |
agatacatgtaagaaagctaggagtttgtaatatatactctcgagtccctgtcacattctttcttcctatttaattattcatatttattatgttttatct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44475772 |
-----------agaaagctaggagtttgtaatatatactctcgagtccctgtcacattctttcttcctatttaattattcatatttattatgttttatct |
44475684 |
T |
|
| Q |
318 |
atctctaatcatcctgaataagttgaaactaataatcatactaatctgatttgggaatcaagcagtcaaaccgtctgctcacattttttaaaacacttga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
44475683 |
atctctaatcatcctgaataagttgaaactaataatcatactaatctgatttgggaatcaggcagtcaaaccgtctgcgcacattttttaaaacacttga |
44475584 |
T |
|
| Q |
418 |
agcccatcaactctataaaatagttgaaacaaaggtgataatatagtggtaaccatgaatacaaaatcaaattttctataatactttttataaagattaa |
517 |
Q |
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| T |
44475583 |
agcccatcaactctataaaatagttgaaacaaaggtgataatatagtggtaaccatgaatacaaaatcaaattttctataatactttttataaagattaa |
44475484 |
T |
|
| Q |
518 |
ataatttacctgatgccaagttaagttgcagattaagattcagataatagctttgatggtcttcaaaaaagcccatatacacgatctctgct |
609 |
Q |
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| T |
44475483 |
ataatttacctgatgccaagttaagttgcagattaagattcagataatagctttgatggtcttcaaaaaagcccatatacacgatctctgct |
44475392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 439 - 606
Target Start/End: Complemental strand, 39849370 - 39849205
Alignment:
| Q |
439 |
agttgaaacaaaggtgataatatagtggtaaccatgaatacaaaatcaaattttctataatacttt-----ttataaagattaaataatttacctgatgc |
533 |
Q |
| |
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|||||||| ||||||||||||| |||||||||| |||||| | ||||||||||| |||||||||| || |||||| |||||||||||||||||| |
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| T |
39849370 |
agttgaaagaaaggtgataata--gtggtaaccacgaatactatatcaaattttccataatactttaattttttaaaagatcaaataatttacctgatgc |
39849273 |
T |
|
| Q |
534 |
caagttaagttgcagattaagattcagataatagctttgatggtcttcaaaaaagcccatatacacgatctct |
606 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||| |
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| T |
39849272 |
caagtt-----gcagattaagattcatataatagctttgatggtcttcaaaattgcccatatgcacgaactct |
39849205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 496 - 606
Target Start/End: Complemental strand, 38633586 - 38633481
Alignment:
| Q |
496 |
taatactttttataaagattaaataatttacctgatgccaagttaagttgcagattaagattcagataatagctttgatggtcttcaaaaaagcccatat |
595 |
Q |
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| T |
38633586 |
taatactttttttaaagatcaagtaatttacctgttgccaagtt-----gcagattaagattcagatactagctttgatggtcttcaaaaaggcccatat |
38633492 |
T |
|
| Q |
596 |
acacgatctct |
606 |
Q |
| |
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||||||||||| |
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| T |
38633491 |
acacgatctct |
38633481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 258 - 345
Target Start/End: Original strand, 38452708 - 38452792
Alignment:
| Q |
258 |
tcgagtccctgtcacattctttcttcctatttaattattcatatttattatgttttatctatctctaatcatcctgaataagttgaaa |
345 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
38452708 |
tcgagtccctatcacgttctttcttcctatttaattattcatat---ttctgttttatctatctctaatcatcctgaataagttgaaa |
38452792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 39849903 - 39849863
Alignment:
| Q |
319 |
tctctaatcatcctgaataagttgaaactaataatcatact |
359 |
Q |
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| T |
39849903 |
tctctaatcatcttgaataagttgaaactaataatcatact |
39849863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 448 - 539
Target Start/End: Original strand, 38453204 - 38453297
Alignment:
| Q |
448 |
aaaggtgataatatagtggtaaccatgaatacaaaatcaaattttctataatacttt----ttataaagattaaataatttacctgatgccaagtt |
539 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | ||||||||||| |||||| ||| || ||| || |||||||||||||||||||||||| |
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| T |
38453204 |
aaaggtgataata--gtggtaaccatgaatactatatcaaattttccataatagttttttgttcaaaaaatcaaataatttacctgatgccaagtt |
38453297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 38452328 - 38452390
Alignment:
| Q |
86 |
agtgttaagtatttatatg-agatcaccctttctcattgtcctgatctctgcataggaaaaat |
147 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||| || | | ||||||||||||||||| |
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| T |
38452328 |
agtgttaagcatttatatggagatcaccctttctcatcatcataacctctgcataggaaaaat |
38452390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 540 - 596
Target Start/End: Original strand, 7045435 - 7045491
Alignment:
| Q |
540 |
aagttgcagattaagattcagataatagctttgatggtcttcaaaaaagcccatata |
596 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
7045435 |
aagttgcaaattaagattcagataatagctttgatggtcttctaaaatggccatata |
7045491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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