View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13199_low_5 (Length: 568)

Name: NF13199_low_5
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13199_low_5
NF13199_low_5
[»] chr4 (18 HSPs)
chr4 (18-456)||(3957434-3957872)
chr4 (62-450)||(4022830-4023218)
chr4 (54-451)||(3984753-3985150)
chr4 (54-450)||(4007672-4008068)
chr4 (454-558)||(3959176-3959280)
chr4 (123-451)||(3999874-4000202)
chr4 (62-228)||(3922019-3922185)
chr4 (212-450)||(3998681-3998919)
chr4 (82-221)||(3808083-3808222)
chr4 (62-447)||(3935367-3935767)
chr4 (82-181)||(3815697-3815796)
chr4 (351-445)||(3815439-3815533)
chr4 (349-456)||(3922309-3922416)
chr4 (54-182)||(3998935-3999063)
chr4 (87-151)||(4000210-4000274)
chr4 (73-150)||(3799929-3800006)
chr4 (87-150)||(4216876-4216939)
chr4 (405-447)||(3807848-3807890)
[»] chr8 (1 HSPs)
chr8 (454-558)||(19167917-19168021)
[»] scaffold0060 (1 HSPs)
scaffold0060 (454-509)||(18706-18761)


Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 3957434 - 3957872
Alignment:
Q  18 acattcagcggcactgttacatcatgctaaaagcaatgaaagcaatgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctgga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957434 acattcagcggcactgttacatcatgctaaaagcaatgaaagcaatgctgattacaaagataaatttgattcttatcaagcagtgtatttgtatcctgga 3957533  T
Q  118 agtagtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgtttttt 217  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957534 agtagtgttccagagtggttcaagtacaggacagcacaggatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgtttttt 3957633  T
Q  218 gcttcatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtat 317  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957634 gctccatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtat 3957733  T
Q  318 cttcatgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcag 417  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3957734 cttcatgtataggtattttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcacgctacctaactagcatagcaaaaaagcag 3957833  T
Q  418 acaaggtttaaaatcaaggttacagcaaggacaacaccc 456  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3957834 acaaggtttaaaatcaaggttacagcaaggacaacaccc 3957872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 62 - 450
Target Start/End: Complemental strand, 4023218 - 4022830
Alignment:
Q  62 atgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggacagcacatgatga 161  Q
    |||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||||| |||| || | |||||    
T  4023218 atgttgattacaaagataactttgattcttatcaagcagtgtatgtttatcctggaagtagtattccagagtggttggagtacaagacaacaaaggatga 4023119  T
Q  162 tatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcatccttgccaaggactcccaattttgttaccaaattgaa 261  Q
     |||||| |||||||||||||   ||  |||||||||||| |||||||||||||||||||  ||||||| ||||||  ||| | |||| ||| |||||||    
T  4023118 catgattgttgatctctctccacattatctctcccctttgctgggctttgttttttgctttgtccttgctaaggacatccattattgtgaccgaattgaa 4023019  T
Q  262 ttgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcatgtataggtcttttttctctagtttttcagatcatgtat 361  Q
    ||||| |||||||||| ||||| ||  | ||| || ||||||| ||| |||| ||| | |||| ||||  |   | ||  || |   ||||||||||| |    
T  4023018 ttgaacatcactacaaatgatgctgaaggtgacgatgaaaagggtggcgtcaatatatacatggatagaacacgtctcggtattgcatcagatcatgtgt 4022919  T
Q  362 gcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaaggaca 450  Q
    ||||||||||||||| ||||| ||| | ||||||||||||||||||||| ||  ||| ||||||||||||||||||||| |||||||||    
T  4022918 gcatgatatacgaccaaccattttctcactacctaactagcatagcaaacaataagagaaggtttaaaatcaaggttacggcaaggaca 4022830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 54 - 451
Target Start/End: Complemental strand, 3985150 - 3984753
Alignment:
Q  54 tgaaagcaatgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggacagca 153  Q
    ||||||| |||||| |||||||||||   ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||| ||    
T  3985150 tgaaagctatgttgattacaaagatatccttgattcttatcaagcagtgtatgtatatcctggaagtagtgttccagagtggttggagtacaagacaaca 3985051  T
Q  154 catgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcatccttgccaaggactcccaattttgttacc 253  Q
     |  ||||||||||| |||||||||| ||   |   |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| |||  ||     
T  3985050 aagaatgatatgattgttgatctctcaccacctcatctctcccctttgttgggctttgttttctgcttcatccttgccgaggactccaaatattgcgaca 3984951  T
Q  254 aaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcatgtataggtcttttttctctagtttttcaga 353  Q
      || ||||| || ||| ||||| |||||| || || ||| |  ||||| |||||||||  ||||| |||||||||| | | || || || |   | |||    
T  3984950 ttatggaatttaacatctctacatttgatggtgagggtgacggtgaaaaagatggtgtcgatatctacatgtataggacatgttgctatactgaattaga 3984851  T
Q  354 tcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaaggacaa 451  Q
    |||||| |||||||||||||||| ||||||||| | ||||||||| |||||||| ||||  ||||||  | |||||||||||||||||||||||||||    
T  3984850 tcatgtgtgcatgatatacgaccaaccatgttctcactacctaaccagcatagccaaaagtcagacacaggttaaaatcaaggttacagcaaggacaa 3984753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 54 - 450
Target Start/End: Complemental strand, 4008068 - 4007672
Alignment:
Q  54 tgaaagcaatgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggacagca 153  Q
    |||||| ||||||| ||||||| | |  |||| ||||||||||||| | ||| ||||||| |||||||  ||||| |||||||| | |||||  ||| ||    
T  4008068 tgaaagtaatgttgattacaaacaaacgtttggttcttatcaagcattttatgtgtatccaggaagtaccgttcctgagtggttggcgtacaaaacaaca 4007969  T
Q  154 catgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcatccttgccaaggactcccaattttgttacc 253  Q
    || |||||||||||| ||||||||| |||   |   ||| |||||||||||||||||||||||||||||||||||||  |||| | ||||  |||| | |    
T  4007968 caggatgatatgattgttgatctctttccaaatcatctcccccctttgttgggctttgttttttgcttcatccttgctgaggattaccaacattgtgaac 4007869  T
Q  254 aaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcatgtataggtcttttttctctagtttttcaga 353  Q
    ||||||| || || |||| |||||||||||    ||||||||| |||||||||||||||||||| | |||| ||||| |   | ||  || |   |||||    
T  4007868 aaattgagttcaacatcagtacaattgatgacaaggatgatgatgaaaaggatggtgtcagtatttacatgaataggacacctctcggtattgcatcaga 4007769  T
Q  354 tcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaaggaca 450  Q
    |||||| ||||||||| |||||| || |||||| || |||||||||||  ||||||| || || |||||||||||||||||||||||||||||||||    
T  4007768 tcatgtgtgcatgatacacgaccaacgatgttctcggtacctaactagagtagcaaagaatcatacaaggtttaaaatcaaggttacagcaaggaca 4007672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 454 - 558
Target Start/End: Original strand, 3959176 - 3959280
Alignment:
Q  454 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3959176 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat 3959275  T
Q  554 ctgtg 558  Q
    |||||    
T  3959276 ctgtg 3959280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 123 - 451
Target Start/End: Complemental strand, 4000202 - 3999874
Alignment:
Q  123 tgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttc 222  Q
    ||||| ||||||||| ||||||| |||| || | ||||| |||||| || || |||||||  ||   |||||| |||||||||||||||||||||||||     
T  4000202 tgttcgagagtggttggagtacaagacaacagaggatgacatgattgttaatatctctccacttcatctctcctctttgttgggctttgttttttgcttt 4000103  T
Q  223 atccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttca 322  Q
     ||||||| |||| |||| | | ||||||| |||||| |||||| |||||| |||||||||||| || |||||  |||||||||||||||  ||| | ||    
T  4000102 gtccttgctaaggtctccaattattgttacaaaattgtattgaacatcactgcaattgatgttgagggtgatggtgaaaaggatggtgtcgatatataca 4000003  T
Q  323 tgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaag 422  Q
    || ||  |  |  | | | || |  |||||||||||| || ||||||||||||||||||| ||| |  ||||||||||| ||||| ||||| || |||||    
T  4000002 tggatgtggatcgtgtttgtaataattcagatcatgtgtgtatgatatacgacccaccattttctcagtacctaactagaatagcgaaaaatcatacaag 3999903  T
Q  423 gtttaaaatcaaggttacagcaaggacaa 451  Q
    ||| |||||||||||| ||||||||||||    
T  3999902 gttcaaaatcaaggttgcagcaaggacaa 3999874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 3922019 - 3922185
Alignment:
Q  62 atgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggacagcacatgatga 161  Q
    |||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| |||| ||   ||||     
T  3922019 atgttgattacaaagataactttgattcttatcaagcagtgtatgtgtatcctggaagtagtgttccaaagtggttggagtacaagacaacaatggatgg 3922118  T
Q  162 tatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcatcctt 228  Q
     |||||| |||||||||||||  ||   ||||||||||||||||| |||||||||||||| ||||||    
T  3922119 catgattgttgatctctctccacttcatctctcccctttgttgggttttgttttttgctttatcctt 3922185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 212 - 450
Target Start/End: Complemental strand, 3998919 - 3998681
Alignment:
Q  212 ttttttgcttcatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgt 311  Q
    |||||||||||||||||||  |||||| ||||  ||||   |||||||| || || ||||||||||||||||    ||||||||| |||||||| |||||    
T  3998919 ttttttgcttcatccttgctgaggactaccaacattgtgcacaaattgagttcaacatcactacaattgatgacaaggatgatgatgaaaaggacggtgt 3998820  T
Q  312 cagtatcttcatgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaa 411  Q
    |||||| | |||| ||||| |   | ||  || |   ||||||||||| ||||||||| || ||| || |||||| || |||||||||||  |||||||     
T  3998819 cagtatttacatgaataggacacctctcagtattgcatcagatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaactagtgtagcaaag 3998720  T
Q  412 aagcagacaaggtttaaaatcaaggttacagcaaggaca 450  Q
    || || |||||||||||||| ||||||||||||||||||    
T  3998719 aatcatacaaggtttaaaattaaggttacagcaaggaca 3998681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 3808222 - 3808083
Alignment:
Q  82 tttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctc 181  Q
    |||| |||| || ||||| ||||| ||||||||||||||| ||||||||||||||| ||||||| |||| || | ||||| | |||| ||||||||||||    
T  3808222 tttggttctgatgaagcaatgtatgtgtatcctggaagtaatgttccagagtggtttgagtacaagacaacaaaggatgacaagattgttgatctctctc 3808123  T
Q  182 cttttttcctctcccctttgttgggctttgttttttgctt 221  Q
    |   |  ||||||||| |||||||||||||||||||||||    
T  3808122 cacctcacctctcccccttgttgggctttgttttttgctt 3808083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 62 - 447
Target Start/End: Original strand, 3935367 - 3935767
Alignment:
Q  62 atgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggacagcacatga--- 158  Q
    |||||| |||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||| ||||||| |||| || | ||       
T  3935367 atgttgattacaaagataactttgattcttatcaagcattgtatgtgtattctggaagtagtgttccagattggtttgagtacaagacaacaaacgagac 3935466  T
Q  159 ---------tgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcatccttgccaaggactcccaattttgt 249  Q
             ||| |||||| |||||||||||||  ||   ||||||||||||||||| |||||||||||||| |||||| |  || ||    ||| |  |    
T  3935467 aacaaacgatgacatgattgttgatctctctccacttcatctctcccctttgttgggttttgttttttgctttatccttcctgagaacgaggaatatgat 3935566  T
Q  250 taccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcatgtataggtcttttttctctagt---t 346  Q
     |  || ||||||| || ||||||||||||||||||| || |||||  |||||||||||| ||| ||| | || | ||  |     | ||| || |        
T  3935567 aagaaagttgaattcaacatcactacaattgatgttgagggtgatggtgaaaaggatggtttcaatatttacacggatttggaacatgtctttaatacac 3935666  T
Q  347 tttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaag 446  Q
      ||||||||||| || ||||| ||||||| ||| || || |  ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  3935667 aatcagatcatgtgtgtatgatttacgaccaaccttgctctcagtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaag 3935766  T
Q  447 g 447  Q
    |    
T  3935767 g 3935767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 82 - 181
Target Start/End: Complemental strand, 3815796 - 3815697
Alignment:
Q  82 tttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctc 181  Q
    |||| |||| || ||||| ||||| ||||||||||||||||| ||||||||||||| ||||||| |||| || | |||||||||||||||||||||||||    
T  3815796 tttggttctgatgaagcaatgtatgtgtatcctggaagtagtattccagagtggttggagtacaagacaacaaaggatgatatgattattgatctctctc 3815697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 445
Target Start/End: Complemental strand, 3815533 - 3815439
Alignment:
Q  351 agatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaa 445  Q
    ||||||||||||||||||| | |||| || ||||||  | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  3815533 agatcatgtatgcatgatacaggaccaacgatgttctgggtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaa 3815439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 349 - 456
Target Start/End: Original strand, 3922309 - 3922416
Alignment:
Q  349 tcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaagga 448  Q
    ||||||||||| || ||||| ||||||| ||| ||||| |   |||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||    
T  3922309 tcagatcatgtgtgtatgatttacgaccaaccttgttctcagcacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcatgga 3922408  T
Q  449 caacaccc 456  Q
    ||| ||||    
T  3922409 caataccc 3922416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 182
Target Start/End: Complemental strand, 3999063 - 3998935
Alignment:
Q  54 tgaaagcaatgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggacagca 153  Q
    |||||| ||||||| ||||||| |||| |||| ||||||||||||| ||||| | ||||| ||||| |||||| |||||| ||| |||||||  ||| ||    
T  3999063 tgaaagtaatgttgattacaaacataagtttggttcttatcaagcattgtatgtttatccaggaagcagtgtttcagagtcgttggagtacaaaacaaca 3998964  T
Q  154 catgatgatatgattattgatctctctcc 182  Q
     | ||||| | |||||||||| |||||||    
T  3998963 aaggatgacaggattattgatatctctcc 3998935  T

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Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 4000274 - 4000210
Alignment:
Q  87 ttcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggacag 151  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||| |||||    
T  4000274 ttcttatcaagcattgtatgtatatcctggaagtagtgttccagagtggttggagtacaagacag 4000210  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 3800006 - 3799929
Alignment:
Q  73 aaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggaca 150  Q
    |||||| | |||| |||||||||||||  |||| | ||| ||||||||||||||||| ||||||| ||||||| ||||    
T  3800006 aaagattactttgcttcttatcaagcaccgtatgtttattctggaagtagtgttccatagtggttggagtacaagaca 3799929  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 4216939 - 4216876
Alignment:
Q  87 ttcttatcaagcagtgtatttgtatcctggaagtagtgttccagagtggttcgagtacaggaca 150  Q
    |||||||||||||  |||| | ||| ||||||||||||||||| ||||||| ||||||| ||||    
T  4216939 ttcttatcaagcaccgtatgtttattctggaagtagtgttccatagtggttggagtacaagaca 4216876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 3807890 - 3807848
Alignment:
Q  405 agcaaaaaagcagacaaggtttaaaatcaaggttacagcaagg 447  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||    
T  3807890 agcaaaaaatcaggcaaggtttaaaatcaaggttacagtaagg 3807848  T

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Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 454 - 558
Target Start/End: Complemental strand, 19168021 - 19167917
Alignment:
Q  454 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat 553  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||||| ||    
T  19168021 cccattgagttcttaatatgctaacactcttcattgcagcagtactaggattgtttacctgatcttcatatctagcaacatgggcaatagccgtgtcaat 19167922  T
Q  554 ctgtg 558  Q
    |||||    
T  19167921 ctgtg 19167917  T

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Target: scaffold0060 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 454 - 509
Target Start/End: Complemental strand, 18761 - 18706
Alignment:
Q  454 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgttt 509  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  18761 cccattgagttcttaatatgcttacactcttcattgaagcagtactaggattgttt 18706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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