View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13199_low_6 (Length: 537)
Name: NF13199_low_6
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13199_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 15350840 - 15351146
Alignment:
| Q |
12 |
atgaacatggacatggatatggacatgatgaatatgaaacctgcatggctagagaggttgatggatgaaacattctttggtgattgtggggtccacaaga |
111 |
Q |
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| T |
15350840 |
atgaacatggacatggatatggacatgatgaatatgaaacctgcatggctagagaggttgatggatgaaacattctttggtgattgtggggtccacaaga |
15350939 |
T |
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| Q |
112 |
atcgaaggaagaacgagaagaacattttttgcttacactgttgtcttagcatctgcccccactgcttatcttctcatacttctcatcctcttctccaggt |
211 |
Q |
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| T |
15350940 |
atcgaaggaagaacgagaagaacattttttgcttacactgttgtcttagcatctgcccccactgcttatcttctcatacttctcatcctcttctccaggt |
15351039 |
T |
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| Q |
212 |
attatattatatcataccataccctattaatttcacacaannnnnnncatatataattaacaattctttcttaaattcaattcactttcttcaattgtaa |
311 |
Q |
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| T |
15351040 |
attatattatatcataccatacactattaatttcacacaatttttttcatatataattaacaattctttcttaaattcaattcactttcttcaattgtaa |
15351139 |
T |
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| Q |
312 |
acccttc |
318 |
Q |
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| T |
15351140 |
acccttc |
15351146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 375 - 521
Target Start/End: Original strand, 15351198 - 15351344
Alignment:
| Q |
375 |
atgtctttcatcttgtcaacttcaattgattaaagggtaattgaaaagtttcacgtgatggtgttaattttgaagtagtcaannnnnnnnggattaattt |
474 |
Q |
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| T |
15351198 |
atgtctttcatcttgtcaacttcaattgattaaagggtaattgaaaagtttcacgtgatggtgttaattttgaagtagacaattttttttggattaattt |
15351297 |
T |
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| Q |
475 |
gttcatcttttcatgttcttggaactttgttatctttaggtcctttt |
521 |
Q |
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| T |
15351298 |
gttcatcttttcatgttcttggaactttgttatctttaggtcctttt |
15351344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 175
Target Start/End: Complemental strand, 38713348 - 38713220
Alignment:
| Q |
47 |
gaaacctgcatggctagagaggttgatggatgaaacattctttggtgattgtggggtccacaagaatcgaaggaagaacgagaagaacattttttgctta |
146 |
Q |
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||||||||||||| |||||||||| |||| ||| ||||||||||| | ||||||||||||| |||| | |||||||||||| |||||||| |||| || |
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| T |
38713348 |
gaaacctgcatggttagagaggttaatgggtgagacattctttgggggttgtggggtccaccagaaccaaaggaagaacgaaaagaacatcctttgtttg |
38713249 |
T |
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| Q |
147 |
cactgttgtcttagcatctgcccccactg |
175 |
Q |
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| T |
38713248 |
cactgttgtctcaccatttgccctcactg |
38713220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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