View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13199_low_7 (Length: 517)
Name: NF13199_low_7
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13199_low_7 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 517
Target Start/End: Original strand, 41079230 - 41079736
Alignment:
| Q |
17 |
tcgtcttggtcggataactttcgcacaatcttccaggtttttatgttatccattatcactgccttggttatagatttcatctacttgacaatccggatgt |
116 |
Q |
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| T |
41079230 |
tcgtcttggtcggataactttcgcacaatcttccaggtttttatgttatccattatcactgccttggttatagatttcatctacttgacaattcggatgt |
41079329 |
T |
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| Q |
117 |
gctacgaaatcttcatcaagtggtggcgttcgccctcaccggcgacagtggcgc-----acgggtaatgaggtcgagatggttccagtttgaagacatca |
211 |
Q |
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| T |
41079330 |
gctacgaaatcttcatcaagtggtggcgttcatcctcaccggcgacagtggcgcctgagacgggtaatgaggtcgagatggttccagtttgaagacatca |
41079429 |
T |
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| Q |
212 |
tccaggtaggttgtttcgtatgttgttcattctattctatcaatactatgaattgggaacacgagagaaaatgatgattgatacatttcatgtaatcact |
311 |
Q |
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| T |
41079430 |
tccaggtaggttgtttcgtatgttgttcattctattctataaatactatgaattgggaacacgagagaaaatgatgattgatacatttcatgtaatcact |
41079529 |
T |
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| Q |
312 |
tggttgcaa-caagtgttgagaatattatgcctagatatcgttttttaggtttaggtttagatataaaataagatagcattatagatagaattaattatg |
410 |
Q |
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| T |
41079530 |
tggttgcaaacaagtgttgagaatattatgcctagatatcgttttttaggtttaggtttagatataaaataagatagcattatagatagaattaattatg |
41079629 |
T |
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| Q |
411 |
aagtgatggtgtaaattttttgcatccaataaaatcatttttaggaactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaa |
510 |
Q |
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| T |
41079630 |
aagtgatggtgtaaattttgtgcatccaataaaatcatttttaggaactaacccaaattggtggcatcataaagtgatttgtttagatgtatgtgtaaaa |
41079729 |
T |
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| Q |
511 |
acgtttc |
517 |
Q |
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| T |
41079730 |
acgtttc |
41079736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 510
Target Start/End: Complemental strand, 15596460 - 15596399
Alignment:
| Q |
449 |
ttttaggaactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaa |
510 |
Q |
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| T |
15596460 |
ttttaggaactaacctaaaaagctggcatcataaagtgatgtgattggatgcatgtgtaaaa |
15596399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 461
Target Start/End: Original strand, 41090959 - 41090991
Alignment:
| Q |
429 |
tttgcatccaataaaatcatttttaggaactaa |
461 |
Q |
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| T |
41090959 |
tttgcatccaataaaatcatttttaggaactaa |
41090991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 41101200 - 41101272
Alignment:
| Q |
328 |
tgagaatattatgcctagatatcgttttttaggtttaggtttagatataaaataagatagcattatagataga |
400 |
Q |
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| T |
41101200 |
tgagaatattaagcctaaatatcgtttttaagatttaggtttagatttatagtaaaatatcgttatagataga |
41101272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 41101136 - 41101171
Alignment:
| Q |
278 |
gaaaatgatgattgatacatttcatgtaatcacttg |
313 |
Q |
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| T |
41101136 |
gaaaatgatgattgatccatttcatgtaatcacttg |
41101171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 33914028 - 33914089
Alignment:
| Q |
450 |
tttaggaactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaaa |
511 |
Q |
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| T |
33914028 |
tttaggaactaacctaaaaatgtgacatcatgaagtgatttgattggatgcatgtgcaaaaa |
33914089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 512
Target Start/End: Original strand, 27048838 - 27048894
Alignment:
| Q |
456 |
aactaacccaaaaaggtggcatcataaagtgatttgtttagatgtatgtgtaaaaac |
512 |
Q |
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| T |
27048838 |
aactaacctaaaaaggtggcatcataaagtaatttgattggattcgtgtgtaaaaac |
27048894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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