View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13199_low_8 (Length: 510)
Name: NF13199_low_8
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13199_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 168 - 409
Target Start/End: Complemental strand, 4240674 - 4240433
Alignment:
| Q |
168 |
ccctatccctttgtactgtccactgttctttctctgtgtgttattataactcatcgatccatccatccatgactcctgtttctctgaatccaccaggtcc |
267 |
Q |
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| T |
4240674 |
ccctatccctttgtactgtccactgttctttctctgtgtgttattataactcatcgatccatccatccatgactcctgtttctctgaatccaccaggtcc |
4240575 |
T |
|
| Q |
268 |
taattccttactacaaggtcaaaaccaattcttcaatatttctcctgttgatcaggacactcctaccttctttaacttacttggagactttggagaaaac |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4240574 |
taattccttactacaaggtcaaaaccaattcttcaatatttctcctgttaatcaggacactcctaccttctttaacttacttggagactttggagaaaac |
4240475 |
T |
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| Q |
368 |
tatgatcatcatcatcatcaggtaagatcatatatgatccct |
409 |
Q |
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| T |
4240474 |
tatgatcatcatcatcatcaggtaagatcatatatgatccct |
4240433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 4240834 - 4240743
Alignment:
| Q |
9 |
gaaatgaaaatggcatcacgtgaatctctttaagacaacccttctctttttagcctctcaattcttttatataagaaccctaccaccctttg |
100 |
Q |
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| T |
4240834 |
gaaatgaaaatggcatcacgtgaatctctttaagacaacccttctctttttagcctctcaattcttttatataagaaccctaccaccctttg |
4240743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 443 - 493
Target Start/End: Complemental strand, 4240397 - 4240347
Alignment:
| Q |
443 |
atagcttattaccaatatattctccatactttgcttttttctctttttatc |
493 |
Q |
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| T |
4240397 |
atagcttattaccaatatattctccatactttgcttttttctctttttatc |
4240347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 186 - 381
Target Start/End: Complemental strand, 19939740 - 19939547
Alignment:
| Q |
186 |
tccactgttctttctctgtgtgttattataactcatcgatccatccatccatgactcctgtttctctgaatccaccaggtcctaattccttactacaagg |
285 |
Q |
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| T |
19939740 |
tccactgttctttct--gtgtgttattataactcatcgatccatccatccatgactcttgtttctctgaatccaccaggtcctaattcctaagtacaagg |
19939643 |
T |
|
| Q |
286 |
tcaaaaccaattcttcaatatttctcctgttgatcaggacactcctaccttctttaacttacttggagactttggagaaaactatgatcatcatca |
381 |
Q |
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| T |
19939642 |
tcaaaacaaattcttcaatatttctcctgttaatcaggacactcctacattctttaaattacttggagactttggagaaaatcatgatcatcatca |
19939547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 168 - 381
Target Start/End: Complemental strand, 19923880 - 19923663
Alignment:
| Q |
168 |
ccctatccctttgtactgtccactgttctttctctgtgtgttattataactcatcgatc----catccatccatgactcctgtttctctgaatccaccag |
263 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||| |||||||||| |
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| T |
19923880 |
ccctatctctctgtactgtccactgttctttctctgtgtgttattataactcatcgatcgatccatccatccatgtcttctgtttctctaaatccaccag |
19923781 |
T |
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| Q |
264 |
gtcctaattccttactacaaggtcaaaaccaattcttcaatatttctcctgttgatcaggacactcctaccttctttaacttacttggagactttggaga |
363 |
Q |
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|| |||||| ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19923780 |
atcttaattctttactacaaagtcaaaaccaattcttcaatatttctcctgttaataaggacactcctaccttctttaaattacttggagactttggaga |
19923681 |
T |
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| Q |
364 |
aaactatgatcatcatca |
381 |
Q |
| |
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||| ||||||||||||| |
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| T |
19923680 |
aaatcatgatcatcatca |
19923663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 19939846 - 19939798
Alignment:
| Q |
38 |
ttaagacaacccttctctttttagcctctcaattcttttatataagaac |
86 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19939846 |
ttaagacaacccttctcattttagcctctcaattcttttatataagaac |
19939798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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