View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13199_low_9 (Length: 472)

Name: NF13199_low_9
Description: NF13199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13199_low_9
NF13199_low_9
[»] chr4 (6 HSPs)
chr4 (10-455)||(42685792-42686237)
chr4 (105-164)||(21185728-21185787)
chr4 (105-164)||(27119326-27119385)
chr4 (409-455)||(27119424-27119470)
chr4 (409-455)||(21185826-21185872)
chr4 (253-292)||(27119384-27119423)


Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 10 - 455
Target Start/End: Original strand, 42685792 - 42686237
Alignment:
Q  10 ataattctcggtaagtttattctgtactcttatccaatctatttatttttgtgaaacacatgttttatgccttgnnnnnnnnnccttctgtggcaggcat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||    
T  42685792 ataattctcggtaagtttattctgtactcttatccaatctatttatttttgtgaaacacatgttttatgccttgtttttttttccttctgtggcaggcat 42685891  T
Q  110 tggttataatggatttccaagaggttgttctgatgacaagctaccatgggccaagttaagtgtttaaggcaggagtttgagttatttttcttttgctatc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42685892 tggttataatggatttccaagaggttgttctgatgacaagctaccatgggccaaggtaagtgtttaaggcaggagtttgagttatttttcttttgctatc 42685991  T
Q  210 atttaaaatttctcattgattgataaatctatttatatgtttcagaaatctaggaccgggaatcctttggagaccaagtacccgtgagtgttttcaaatc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42685992 atttaaaatttctcattgattgataaatctatttatatgtttcagaaatctaggaccgggaatcctttggagaccaagtacccgtgagtgttttcaaatc 42686091  T
Q  310 atatttcactcttgttgtaaccttaatcatgttctcgctcaagtcttttaattaatcaggatgactttgataatggtttttctgttcttcctattctagt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42686092 atatttcactcttgttgtaaccttaatcatgttctcgctcaagtcttttcattaataaggatgactttgataatggtttttctgttcttcctattctagt 42686191  T
Q  410 tatgtttgtcatgctgaagtaaatgctattcttaacacaaaccatg 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  42686192 tatgtttgtcatgctgaagtaaatgctattcttaacacaaaccatg 42686237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 21185728 - 21185787
Alignment:
Q  105 ggcattggttataatggatttccaagaggttgttctgatgacaagctaccatgggccaag 164  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  21185728 ggcattggttataatgaatttccaagaggttgttctgatgacaagttaccatgggccaag 21185787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 27119326 - 27119385
Alignment:
Q  105 ggcattggttataatggatttccaagaggttgttctgatgacaagctaccatgggccaag 164  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  27119326 ggcattggttataatgaatttccaagaggttgttctgatgacaagttaccatgggccaag 27119385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 27119424 - 27119470
Alignment:
Q  409 ttatgtttgtcatgctgaagtaaatgctattcttaacacaaaccatg 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27119424 ttatgtttgtcatgctgaagtaaatgctattcttaacacaaaccatg 27119470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 21185826 - 21185872
Alignment:
Q  409 ttatgtttgtcatgctgaagtaaatgctattcttaacacaaaccatg 455  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  21185826 ttatgtctgtcatgctgaagtaaatgctattcttaacacaaaccatg 21185872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 27119384 - 27119423
Alignment:
Q  253 agaaatctaggaccgggaatcctttggagaccaagtaccc 292  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  27119384 agaaatctaggactgggaatcctttggagactaagtaccc 27119423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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