View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1319_high_1 (Length: 677)

Name: NF1319_high_1
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1319_high_1
NF1319_high_1
[»] chr8 (2 HSPs)
chr8 (43-398)||(44516052-44516419)
chr8 (409-662)||(44515772-44516025)
[»] chr5 (2 HSPs)
chr5 (176-310)||(1917806-1917940)
chr5 (495-662)||(1917452-1917618)
[»] chr1 (1 HSPs)
chr1 (444-662)||(29120889-29121107)
[»] chr6 (1 HSPs)
chr6 (176-310)||(32252499-32252633)
[»] chr4 (1 HSPs)
chr4 (195-274)||(35105754-35105829)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 43 - 398
Target Start/End: Complemental strand, 44516419 - 44516052
Alignment:
Q  43 agttttgttatgcactccacatcctactagaagcacagtgtgatttgtaaggtggaatgggactggaggtccccagtacacctgcaaaaggtaaaaaaca 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44516419 agttttgttatgcactccacatcctactagaagcacagtgtgatttgtaaggtggaatgggactggaggtccccagtacacctgcaaaaggtaaaaaaca 44516320  T
Q  143 gaaaaatatcaatcacaatctttcnnnnnnnnn--aagagcaaagacaaattttattgaattgaaacacaacacaagtataag--------gtatacttt 232  Q
    |||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||    
T  44516319 gaaaaatatcaatcacaatctttattttttttttgaagagcaaagacaaattttattgaattgaaacacaacacaagtacaagtgtacaaggtatacttt 44516220  T
Q  233 gtgtgtgaaaatagatacaggaagtgccaca--agtaaaacaatacaagtagcaacaggaaccaacagcataccaaacacctgataacaaaagcactaac 330  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  44516219 gtgtgtgaaaatagatacaggaagtgccacacaagtaaaacaatacaagtagcaacaggaaccaacagcataccaaacacccgataacaaaagcactgac 44516120  T
Q  331 caaaagataactaaacaatcaaagccactccctattcaaacagcaaaccaaaaataaaccaccaccac 398  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44516119 caaaagataactaaacaatcaaagccactccctatgcaaacagcaaaccaaaaataaaccaccaccac 44516052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 409 - 662
Target Start/End: Complemental strand, 44516025 - 44515772
Alignment:
Q  409 tatcacaatggctccataagcgatgctccgacctgtactcaaacccaatctgacnnnnnnntgaatagctgaactgcaacttaaaactcaagaaccacag 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||| | |||||||||    
T  44516025 tatcacaatggctccataagcgatgctccgacctgtactcaaacccaatctgacaaaaaaatgaatagctgaactgcaaattaaaacttaggaaccacag 44515926  T
Q  509 tttaaatcacaaccaacaacaaaggtacctcatgaaaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacggacacctataattct 608  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||    
T  44515925 tttaaatcacaaccaacaacaaaggtgcctcatgaaaacaaaatccgaagatcccccaaaataaagtaaacacaaacaagagacagacgcctataattct 44515826  T
Q  609 gctcaaacagaaacagatcagaatcaccaagacaacatcactgaaaattcaagt 662  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  44515825 gctcaaacagaaacggatcagaatcactaagacaacatcactgaaaattcaagt 44515772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 1917940 - 1917806
Alignment:
Q  176 aagagcaaagacaaattttattgaattgaaacacaacacaagtataaggtatactttgtgtgtgaaaatagatacaggaagtgccacaagtaaaacaata 275  Q
    |||||||||||||||| |||||| |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| |||||| |||||||||    
T  1917940 aagagcaaagacaaatattattgcattgaaacacaacacaagtacaagatatactctgtgtgtgaaaatagatacaggaagtgacacaagcaaaacaata 1917841  T
Q  276 caagtagcaacaggaaccaacagcataccaaacac 310  Q
    |||| | || |||||||||| |||| |||||||||    
T  1917840 caagaaacaccaggaaccaatagcaaaccaaacac 1917806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 495 - 662
Target Start/End: Complemental strand, 1917618 - 1917452
Alignment:
Q  495 ctcaagaaccacagtttaaatcacaaccaacaacaaaggtacctcatgaaaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacgg 594  Q
    |||| ||||||||||||| ||||| |||||||| |||  | |||||  |||||||||||| ||||||| ||||| ||||| |||||||||||||||||||    
T  1917618 ctcaggaaccacagtttagatcacgaccaacaataaatatgcctcacaaaaacaaaatccaaagatcc-ccaaactaaagcaaacacaaacaagagacgg 1917520  T
Q  595 acacctataattctgctcaaacagaaacagatcagaatcaccaagacaacatcactgaaaattcaagt 662  Q
    |||||| || |||| |||| ||||| |  |||||||| |||||||||||||   |||||| |||||||    
T  1917519 acacctgtacttctactcatacagacaaggatcagaaacaccaagacaacaatgctgaaagttcaagt 1917452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 444 - 662
Target Start/End: Original strand, 29120889 - 29121107
Alignment:
Q  444 tactcaaacccaatctgacnnnnnnntgaatagctgaactgcaacttaaaactcaagaaccacagtttaaatcacaaccaacaacaaaggtacctcatga 543  Q
    |||||||||||||||||||        ||| ||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||| | |||||  |    
T  29120889 tactcaaacccaatctgactaaaaaacgaacagctgaactgcaaataaaatctcaaaaaccacagtttaaatcacaaccaacaacaaagatgcctcacaa 29120988  T
Q  544 aaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacggacacctataattctgctcaaacagaaacagatcagaatcaccaagacaa 643  Q
    ||||||||| | |||||||   ||| ||||| |||||||||||| ||| |||||||| || ||||||||||||||| |  |||||||| |||||||||||    
T  29120989 aaacaaaattcaaagatcccttaaactaaagcaaacacaaacaaaagaaggacacctgtacttctgctcaaacagacaaggatcagaaacaccaagacaa 29121088  T
Q  644 catcactgaaaattcaagt 662  Q
    ||   ||||||||||||||    
T  29121089 caatgctgaaaattcaagt 29121107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 32252633 - 32252499
Alignment:
Q  176 aagagcaaagacaaattttattgaattgaaacacaacacaagtataaggtatactttgtgtgtgaaaatagatacaggaagtgccacaagtaaaacaata 275  Q
    |||||||||||||||| |||||| ||| ||||||||||||| || || ||||||||||||||||||||||||||||| ||||| |||||| |||||||||    
T  32252633 aagagcaaagacaaatattattgcattaaaacacaacacaaatacaatgtatactttgtgtgtgaaaatagatacagaaagtgacacaagcaaaacaata 32252534  T
Q  276 caagtagcaacaggaaccaacagcataccaaacac 310  Q
    |||| | || ||  ||||||||||| |||||||||    
T  32252533 caagaaacaccaataaccaacagcaaaccaaacac 32252499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 35105829 - 35105754
Alignment:
Q  195 attgaattgaaacacaacacaagtataaggtatactttgtgtgtgaaaatagatacaggaagtgccacaagtaaaacaat 274  Q
    |||||| ||||||||||||||     ||||||||||||||||||||||| ||||||| ||||||  ||||| ||||||||    
T  35105829 attgaaatgaaacacaacacac----aaggtatactttgtgtgtgaaaacagatacatgaagtgaaacaagcaaaacaat 35105754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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