View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_high_12 (Length: 391)
Name: NF1319_high_12
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 43 - 378
Target Start/End: Original strand, 22726834 - 22727171
Alignment:
| Q |
43 |
aagactccgatggaagcaaaccttcaaa-atttaacagaacaaaaatagtataattcggggatcgtatacaggga-------ggaatgtgagagtaatga |
134 |
Q |
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| T |
22726834 |
aagactccaatggaagcaaaccttcaaagatttaacagaacaaaaatagtataatttggggatcgtatacagggatcttttgggactgtgagagtaatga |
22726933 |
T |
|
| Q |
135 |
atcatagggtacgtatagtgtccagtggaacaaagtgcatgccatgaatatacacaatcagcataataaagatagaaatcacaatatctacaattatata |
234 |
Q |
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| T |
22726934 |
atcatagggtatgtatagtgt--agtggaacaaagtgcaggccgtgaatatacacaatcagcataataaaaatagaaatcacaatatctacaattacata |
22727031 |
T |
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| Q |
235 |
tgtacctatcattagccagattccaagcttcttgcctcaattctggacgtgtttcaagggtggcaagttaatttgaaataaacttgtgaggatgttcaac |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22727032 |
----cctatcattagccagattccaagcttcttgcctcaattctggaggagtttcaagggtggcaaggtaatttgaaataaacttgtgaggatgttcaac |
22727127 |
T |
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| Q |
335 |
atgacaaataaatcccatttctttcaaaatatgtctccctgttc |
378 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22727128 |
atgacaaataaatcccatttctttcaaaatatgtctctctgttc |
22727171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 233 - 371
Target Start/End: Complemental strand, 2645541 - 2645403
Alignment:
| Q |
233 |
tatgtacctatcattagccagattccaagcttcttgcctcaattctggacgtgtttcaagggtggcaagttaatttgaaataaacttgtgaggatgttca |
332 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
2645541 |
tatgtacctatcgttagccagattccaagcttcttgactcaactctggaggtgtttcaagggtagcaaggtaattcgaaataaacttgtgaggatgttca |
2645442 |
T |
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| Q |
333 |
acatgacaaataaatcccatttctttcaaaatatgtctc |
371 |
Q |
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| T |
2645441 |
acatgacaaatgaatcccatttctttcaaaatatgtctc |
2645403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 8877678 - 8877570
Alignment:
| Q |
43 |
aagactccgatggaagcaaaccttcaaaatttaacagaacaaaaatagtataattcggggatcgtatacagggaggaatgtgagagtaatgaatcatagg |
142 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8877678 |
aagactccaatggaagcaaaccttcaaaatttaacagaacaaaaatagtataattcggggatcgtatacagggaggaatgtgagagtaatgaatcatagg |
8877579 |
T |
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| Q |
143 |
gtacgtata |
151 |
Q |
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||||||||| |
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| T |
8877578 |
gtacgtata |
8877570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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