View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1319_high_15 (Length: 390)

Name: NF1319_high_15
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1319_high_15
NF1319_high_15
[»] chr6 (10 HSPs)
chr6 (163-285)||(20129267-20129389)
chr6 (163-285)||(22203481-22203603)
chr6 (163-285)||(20087515-20087638)
chr6 (84-150)||(20130239-20130305)
chr6 (84-150)||(22202565-22202631)
chr6 (89-150)||(20087804-20087865)
chr6 (21-62)||(20130363-20130404)
chr6 (21-62)||(22202466-22202507)
chr6 (327-361)||(913229-913263)
chr6 (29-61)||(20087950-20087982)
[»] chr8 (1 HSPs)
chr8 (86-130)||(33933319-33933363)
[»] chr4 (2 HSPs)
chr4 (84-142)||(20634673-20634731)
chr4 (86-150)||(40287176-40287240)
[»] chr5 (1 HSPs)
chr5 (22-62)||(21485097-21485137)
[»] chr1 (1 HSPs)
chr1 (22-62)||(27120984-27121024)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 163 - 285
Target Start/End: Complemental strand, 20129389 - 20129267
Alignment:
Q  163 ttgaattctgcagaaaattaatcagaaaaatccacaagtttgaatatataggaagtgattccattgaatatatgtattaaaacaatattaaaccttttca 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  20129389 ttgaattctgcagaaaattaatcagaaaaatccacaagtttgaatatataggaagtgattccattgaatatatgtattaaatcaatatgaaaccttttca 20129290  T
Q  263 acaattccatagaattataatat 285  Q
    |||||||||||||||||||||||    
T  20129289 acaattccatagaattataatat 20129267  T

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Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 22203481 - 22203603
Alignment:
Q  163 ttgaattctgcagaaaattaatcagaaaaatccacaagtttgaatatataggaagtgattccattgaatatatgtattaaaacaatattaaaccttttca 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  22203481 ttgaattctgcagaaaattaatcagaaaaatccacaagtttgaatatataggaagtgattccattgaatatatgtattaaatcaatatgaaaccttttca 22203580  T
Q  263 acaattccatagaattataatat 285  Q
    |||||||||||||||||||||||    
T  22203581 acaattccatagaattataatat 22203603  T

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Target: chr6; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 163 - 285
Target Start/End: Complemental strand, 20087638 - 20087515
Alignment:
Q  163 ttgaattctgcagaaaattaatcagaaaaatccacaagtttgaatatataggaagtgattccattgaatatatgtattaaaacaatattaaaccttttca 262  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20087638 ttgaattctgcacaaaattaataagaaaaatccacaagtttgaatatataggaagtgattccattgaatatatgtattaaaacaatatgaaaccttttca 20087539  T
Q  263 a-caattccatagaattataatat 285  Q
    | ||||||||||||||||||||||    
T  20087538 atcaattccatagaattataatat 20087515  T

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Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 20130305 - 20130239
Alignment:
Q  84 aagttgttgtccaagcaacattgtggttctcctcttgaagatatctcgtaatgcgccacacgtcttg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  20130305 aagttgttgtccaagcaacattgtggttctcctcttgaagatatctagtaacgcgccacacgtcttg 20130239  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 22202565 - 22202631
Alignment:
Q  84 aagttgttgtccaagcaacattgtggttctcctcttgaagatatctcgtaatgcgccacacgtcttg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  22202565 aagttgttgtccaagcaacattgtggttctcctcttgaagatatctagtaacgcgccacacgtcttg 22202631  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 20087865 - 20087804
Alignment:
Q  89 gttgtccaagcaacattgtggttctcctcttgaagatatctcgtaatgcgccacacgtcttg 150  Q
    ||||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||||    
T  20087865 gttgtccaagcaacattgtggttctcctcttgaaggtaactcgtaacgcgccgcacgtcttg 20087804  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 20130404 - 20130363
Alignment:
Q  21 ccagcttgatcgttcgggtcacgtgagctccactttcaacat 62  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20130404 ccagcttgatcgttcgggtcacgtgagctccactttcaacat 20130363  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 22202466 - 22202507
Alignment:
Q  21 ccagcttgatcgttcgggtcacgtgagctccactttcaacat 62  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22202466 ccagcttgatcgttcgggtcacgtgagctccactttcaacat 22202507  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 913263 - 913229
Alignment:
Q  327 caagaagaaaggcattgatgatagtatataacaac 361  Q
    |||||||||||||||||||||||||||||||||||    
T  913263 caagaagaaaggcattgatgatagtatataacaac 913229  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 20087982 - 20087950
Alignment:
Q  29 atcgttcgggtcacgtgagctccactttcaaca 61  Q
    ||||||||| |||||||||||||||||||||||    
T  20087982 atcgttcggatcacgtgagctccactttcaaca 20087950  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 33933363 - 33933319
Alignment:
Q  86 gttgttgtccaagcaacattgtggttctcctcttgaagatatctc 130  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  33933363 gttgttgtccaagcaacattgtggtcctcctcttgaaggtatctc 33933319  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 20634673 - 20634731
Alignment:
Q  84 aagttgttgtccaagcaacattgtggttctcctcttgaagatatctcgtaatgcgccac 142  Q
    ||||||||||||||||||| ||||||| |||||||||||| | |||| ||||| |||||    
T  20634673 aagttgttgtccaagcaaccttgtggtcctcctcttgaaggtgtctcataatgtgccac 20634731  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 40287240 - 40287176
Alignment:
Q  86 gttgttgtccaagcaacattgtggttctcctcttgaagatatctcgtaatgcgccacacgtcttg 150  Q
    ||||||||| ||||||||||||||| |||||||||||| |||| | ||| | ||||||| |||||    
T  40287240 gttgttgtctaagcaacattgtggtcctcctcttgaagttatcgcataacgtgccacacatcttg 40287176  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 21485137 - 21485097
Alignment:
Q  22 cagcttgatcgttcgggtcacgtgagctccactttcaacat 62  Q
    |||||||||||||| |||||| |||||||||| ||||||||    
T  21485137 cagcttgatcgttcaggtcacatgagctccacattcaacat 21485097  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 27120984 - 27121024
Alignment:
Q  22 cagcttgatcgttcgggtcacgtgagctccactttcaacat 62  Q
    |||||||||||||| |||||||||||||||| | |||||||    
T  27120984 cagcttgatcgttcaggtcacgtgagctccattgtcaacat 27121024  T

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