View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_high_19 (Length: 368)
Name: NF1319_high_19
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 339
Target Start/End: Original strand, 49672719 - 49673035
Alignment:
| Q |
21 |
aaatacaacaatcaaacattatcttactaggttggattgattaaactacacgatactattatattttatgatagttcatatctatccatgagagaagata |
120 |
Q |
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| T |
49672719 |
aaatacaacaatcaaacattatcttactaggttggattgactaaactacacgatactattatattttatgatagttcatatctatccatgagagaagata |
49672818 |
T |
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| Q |
121 |
ctcttcgaatttnnnnnnnnnnnnnnnnnnnncagttaaatagaatgattgtcatgcttaatgtttttagccttttaggaggaattaattgctgtatgac |
220 |
Q |
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| T |
49672819 |
ctcttcgaagttaaaaaaaaataaaaaata--cagttaaatagaatgattgtcatgcttaatgtttttagccttttaggaggaattaattgctgtatgac |
49672916 |
T |
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| Q |
221 |
ttaattttatctacttttttctattaacaacacatagtgttgaattgaaatgagatggatgtcatagtagaaaaaggccaataaccaaaacaagacagag |
320 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49672917 |
tttattttatctacttttttctattaacaacacatagtgttgaattgaaatgagatggatgtcatagtagaaaaaggccaataaccaaaacaatacagag |
49673016 |
T |
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| Q |
321 |
acaacacgtacgtggcatc |
339 |
Q |
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||| ||||||||||||||| |
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| T |
49673017 |
acagcacgtacgtggcatc |
49673035 |
T |
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