View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1319_high_2 (Length: 676)

Name: NF1319_high_2
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1319_high_2
NF1319_high_2
[»] chr8 (2 HSPs)
chr8 (43-397)||(44516052-44516419)
chr8 (408-661)||(44515772-44516025)
[»] chr5 (2 HSPs)
chr5 (175-309)||(1917806-1917940)
chr5 (494-661)||(1917452-1917618)
[»] chr1 (1 HSPs)
chr1 (443-661)||(29120889-29121107)
[»] chr6 (1 HSPs)
chr6 (175-309)||(32252499-32252633)
[»] chr4 (1 HSPs)
chr4 (194-273)||(35105754-35105829)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 43 - 397
Target Start/End: Complemental strand, 44516419 - 44516052
Alignment:
Q  43 agttttgttatgcactccacatcctactagaagcacagtgtgatttgtaaggtggaatgggactggaggtccccagtacacctgcaaaaggtaaaaaaca 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44516419 agttttgttatgcactccacatcctactagaagcacagtgtgatttgtaaggtggaatgggactggaggtccccagtacacctgcaaaaggtaaaaaaca 44516320  T
Q  143 gaaaaatatcaatcacaatctttcnnnnnnnn---aagagcaaagacaaattttattgaattgaaacacaacacaagtataag--------gtatacttt 231  Q
    |||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||    
T  44516319 gaaaaatatcaatcacaatctttattttttttttgaagagcaaagacaaattttattgaattgaaacacaacacaagtacaagtgtacaaggtatacttt 44516220  T
Q  232 gtgtgtgaaaatagatacaggaagtgccaca--agtaaaacaatacaagtagcaacaggaaccaacagcataccaaacacctgataacaaaagcactaac 329  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  44516219 gtgtgtgaaaatagatacaggaagtgccacacaagtaaaacaatacaagtagcaacaggaaccaacagcataccaaacacccgataacaaaagcactgac 44516120  T
Q  330 caaaagataactaaacaatcaaagccactccctattcaaacagcaaaccaaaaataaaccaccaccac 397  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44516119 caaaagataactaaacaatcaaagccactccctatgcaaacagcaaaccaaaaataaaccaccaccac 44516052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 408 - 661
Target Start/End: Complemental strand, 44516025 - 44515772
Alignment:
Q  408 tatcacaatggctccataagcgatgctccgacctgtactcaaacccaatctgacnnnnnnntgaatagctgaactgcaacttaaaactcaagaaccacag 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||| | |||||||||    
T  44516025 tatcacaatggctccataagcgatgctccgacctgtactcaaacccaatctgacaaaaaaatgaatagctgaactgcaaattaaaacttaggaaccacag 44515926  T
Q  508 tttaaatcacaaccaacaacaaaggtacctcatgaaaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacggacacctataattct 607  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||    
T  44515925 tttaaatcacaaccaacaacaaaggtgcctcatgaaaacaaaatccgaagatcccccaaaataaagtaaacacaaacaagagacagacgcctataattct 44515826  T
Q  608 gctcaaacagaaacagatcagaatcaccaagacaacatcactgaaaattcaagt 661  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  44515825 gctcaaacagaaacggatcagaatcactaagacaacatcactgaaaattcaagt 44515772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 175 - 309
Target Start/End: Complemental strand, 1917940 - 1917806
Alignment:
Q  175 aagagcaaagacaaattttattgaattgaaacacaacacaagtataaggtatactttgtgtgtgaaaatagatacaggaagtgccacaagtaaaacaata 274  Q
    |||||||||||||||| |||||| |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| |||||| |||||||||    
T  1917940 aagagcaaagacaaatattattgcattgaaacacaacacaagtacaagatatactctgtgtgtgaaaatagatacaggaagtgacacaagcaaaacaata 1917841  T
Q  275 caagtagcaacaggaaccaacagcataccaaacac 309  Q
    |||| | || |||||||||| |||| |||||||||    
T  1917840 caagaaacaccaggaaccaatagcaaaccaaacac 1917806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 494 - 661
Target Start/End: Complemental strand, 1917618 - 1917452
Alignment:
Q  494 ctcaagaaccacagtttaaatcacaaccaacaacaaaggtacctcatgaaaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacgg 593  Q
    |||| ||||||||||||| ||||| |||||||| |||  | |||||  |||||||||||| ||||||| ||||| ||||| |||||||||||||||||||    
T  1917618 ctcaggaaccacagtttagatcacgaccaacaataaatatgcctcacaaaaacaaaatccaaagatcc-ccaaactaaagcaaacacaaacaagagacgg 1917520  T
Q  594 acacctataattctgctcaaacagaaacagatcagaatcaccaagacaacatcactgaaaattcaagt 661  Q
    |||||| || |||| |||| ||||| |  |||||||| |||||||||||||   |||||| |||||||    
T  1917519 acacctgtacttctactcatacagacaaggatcagaaacaccaagacaacaatgctgaaagttcaagt 1917452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 443 - 661
Target Start/End: Original strand, 29120889 - 29121107
Alignment:
Q  443 tactcaaacccaatctgacnnnnnnntgaatagctgaactgcaacttaaaactcaagaaccacagtttaaatcacaaccaacaacaaaggtacctcatga 542  Q
    |||||||||||||||||||        ||| ||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||| | |||||  |    
T  29120889 tactcaaacccaatctgactaaaaaacgaacagctgaactgcaaataaaatctcaaaaaccacagtttaaatcacaaccaacaacaaagatgcctcacaa 29120988  T
Q  543 aaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacggacacctataattctgctcaaacagaaacagatcagaatcaccaagacaa 642  Q
    ||||||||| | |||||||   ||| ||||| |||||||||||| ||| |||||||| || ||||||||||||||| |  |||||||| |||||||||||    
T  29120989 aaacaaaattcaaagatcccttaaactaaagcaaacacaaacaaaagaaggacacctgtacttctgctcaaacagacaaggatcagaaacaccaagacaa 29121088  T
Q  643 catcactgaaaattcaagt 661  Q
    ||   ||||||||||||||    
T  29121089 caatgctgaaaattcaagt 29121107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 175 - 309
Target Start/End: Complemental strand, 32252633 - 32252499
Alignment:
Q  175 aagagcaaagacaaattttattgaattgaaacacaacacaagtataaggtatactttgtgtgtgaaaatagatacaggaagtgccacaagtaaaacaata 274  Q
    |||||||||||||||| |||||| ||| ||||||||||||| || || ||||||||||||||||||||||||||||| ||||| |||||| |||||||||    
T  32252633 aagagcaaagacaaatattattgcattaaaacacaacacaaatacaatgtatactttgtgtgtgaaaatagatacagaaagtgacacaagcaaaacaata 32252534  T
Q  275 caagtagcaacaggaaccaacagcataccaaacac 309  Q
    |||| | || ||  ||||||||||| |||||||||    
T  32252533 caagaaacaccaataaccaacagcaaaccaaacac 32252499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 273
Target Start/End: Complemental strand, 35105829 - 35105754
Alignment:
Q  194 attgaattgaaacacaacacaagtataaggtatactttgtgtgtgaaaatagatacaggaagtgccacaagtaaaacaat 273  Q
    |||||| ||||||||||||||     ||||||||||||||||||||||| ||||||| ||||||  ||||| ||||||||    
T  35105829 attgaaatgaaacacaacacac----aaggtatactttgtgtgtgaaaacagatacatgaagtgaaacaagcaaaacaat 35105754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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