View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_high_22 (Length: 360)
Name: NF1319_high_22
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_high_22 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 30 - 360
Target Start/End: Complemental strand, 24058641 - 24058311
Alignment:
| Q |
30 |
tctcccatatagatgactactgagagatccatttgccatgtaattgtacactagaaccagttccgagtcttcattacaacaacctatgagagagacaaga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
24058641 |
tctcccatatagatgactactgagagatccatttgccatgtaattgtacactagaaccagttctgagtcttcattacaacaaccaatgagagagacaaga |
24058542 |
T |
|
| Q |
130 |
tttgaatgacgaagaccagacaacaactcaatctcgttatggaattcaccgagaccttgtctagattcaggatttgctactttgatggctactattttcc |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24058541 |
tttgaatgacgaagaccagacaacaactcaatctcgttatggaattcaccgagaccttgtctagattcaggatttgctactttgatggctactattttcc |
24058442 |
T |
|
| Q |
230 |
cattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcactgcatcaaaattctttgttgcttgtttgatctcatgcaaagt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24058441 |
cattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcacagcatcaaaattctttgttgcttgttggatctcatgcaaagt |
24058342 |
T |
|
| Q |
330 |
aaaatgcatcagaaatttgttagcatttact |
360 |
Q |
| |
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||||||| ||||||||| || |||||||||| |
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| T |
24058341 |
aaaatgcctcagaaattcgtaagcatttact |
24058311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 30 - 335
Target Start/End: Original strand, 14671384 - 14671689
Alignment:
| Q |
30 |
tctcccatatagatgactactgagagatccatttgccatgtaattgtacactagaaccagttccgagtcttcattacaacaacctatgagagagacaaga |
129 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||| || |||||||| |
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| T |
14671384 |
tctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagttctgagtcttcgttacaacaacctacaagtgagacaagg |
14671483 |
T |
|
| Q |
130 |
tttgaatgacgaagaccagacaacaactcaatctcgttatggaattcaccgagaccttgtctagattcaggatttgctactttgatggctactattttcc |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| || | |
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|
| T |
14671484 |
tttgaatgactaagaccagacaacaactcaatctcgttgtggaattcatcgagaccttgtctagattcaggatttgctactttgatagctactacttctc |
14671583 |
T |
|
| Q |
230 |
cattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcactgcatcaaaattctttgttgcttgtttgatctcatgcaaagt |
329 |
Q |
| |
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||||||| || ||||||||||||| ||||||||||||||| |||||| | |||| | || |||||| ||||||||||||| |||||| | ||||| |
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| T |
14671584 |
cattttcaagcgttcctttatacacttttccaaatcctccttttccaattattagctcagcgtcaaaacaatttgttgcttgttgcatctcaagtaaagt |
14671683 |
T |
|
| Q |
330 |
aaaatg |
335 |
Q |
| |
|
|||||| |
|
|
| T |
14671684 |
aaaatg |
14671689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 30 - 335
Target Start/End: Original strand, 14676762 - 14677067
Alignment:
| Q |
30 |
tctcccatatagatgactactgagagatccatttgccatgtaattgtacactagaaccagttccgagtcttcattacaacaacctatgagagagacaaga |
129 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||| || |||||||| |
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| T |
14676762 |
tctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagttctgagtcttcgttacaacaacctacaagtgagacaagg |
14676861 |
T |
|
| Q |
130 |
tttgaatgacgaagaccagacaacaactcaatctcgttatggaattcaccgagaccttgtctagattcaggatttgctactttgatggctactattttcc |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| || | |
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| T |
14676862 |
tttgaatgactaagaccagacaacaactcaatctcgttgtggaattcatcgagaccttgtctagattcaggatttgctactttgatagctactacttctc |
14676961 |
T |
|
| Q |
230 |
cattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcactgcatcaaaattctttgttgcttgtttgatctcatgcaaagt |
329 |
Q |
| |
|
||||||| || ||||||||||||| ||||||||||||||| |||||| | |||| | || |||||| ||||||||||||| |||||| | ||||| |
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| T |
14676962 |
cattttcaagcgttcctttatacacttttccaaatcctccttttccaattattagctcagcgtcaaaacaatttgttgcttgttgcatctcaagtaaagt |
14677061 |
T |
|
| Q |
330 |
aaaatg |
335 |
Q |
| |
|
|||||| |
|
|
| T |
14677062 |
aaaatg |
14677067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 14684930 - 14684690
Alignment:
| Q |
30 |
tctcccatatagatgactactgagagatccatttgccatgtaattgtacactagaaccagttccgagtcttcattacaacaacctatgagagagacaaga |
129 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||| |||||| |
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| T |
14684930 |
tctcccatatagataactgctgagagatccatttgccatgtaattgtacacaagaatcagttccgagtcttggttacaacaacctacaagagtgacaagg |
14684831 |
T |
|
| Q |
130 |
tttgaatgacgaagaccagacaacaactcaatctcgttatggaattcaccgagaccttgtctagattcaggatttgctactttgatggctactattttcc |
229 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |
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| T |
14684830 |
tttgaatgacgaagaccagacaaaaactcaatctcgttgtggaattcaccgagaccttgtctagattcaggatttgctactttgatagctactacttttc |
14684731 |
T |
|
| Q |
230 |
cattttctagttttcctttatacacctttccaaatcctcct |
270 |
Q |
| |
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||||||| ||| || |||||||||| || |||||||||||| |
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| T |
14684730 |
cattttcaagtgtttctttatacactttgccaaatcctcct |
14684690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 30 - 313
Target Start/End: Complemental strand, 30730436 - 30730153
Alignment:
| Q |
30 |
tctcccatatagatgactactgagagatccatttgccatgtaattgtacactagaaccagttccgagtcttcattacaacaacctatgagagagacaaga |
129 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||| ||| ||||||||| || |||||||| |
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| T |
30730436 |
tctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagttctgagtcttcgttataacaacctacaagtgagacaagg |
30730337 |
T |
|
| Q |
130 |
tttgaatgacgaagaccagacaacaactcaatctcgttatggaattcaccgagaccttgtctagattcaggatttgctactttgatggctactattttcc |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | |
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|
| T |
30730336 |
tttgaatgactaagaccagacaacaactcaatctcgttttggaattcaccgagaccttgtctagattcaggatttgctactttgatagctactacttctc |
30730237 |
T |
|
| Q |
230 |
cattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcactgcatcaaaattctttgttgcttgtt |
313 |
Q |
| |
|
||||||| || ||||||| ||||| || ||||||||| || |||||| | |||| | || |||||| ||||||||||||| |
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| T |
30730236 |
cattttcaagcgttcctttgtacactttgccaaatccttcttttccaattattagctcagcgtcaaaacaatttgttgcttgtt |
30730153 |
T |
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