View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1319_high_27 (Length: 333)

Name: NF1319_high_27
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1319_high_27
NF1319_high_27
[»] chr7 (1 HSPs)
chr7 (12-304)||(21026647-21026940)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 21026940 - 21026647
Alignment:
Q  12 acagacaacagccga-aaaatgcaaaagaggattcagatctacgccctgaaaacactcgttaacaatatccgtaatttatttgaacatgattagtaaacc 110  Q
    ||||||| ||||||| |||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21026940 acagacagcagccgagaaaatgcaaaagaggattaagatctatgtcctgaaaacactcgttaacaatatccgtaatttatttgaacatgaatagtaaacc 21026841  T
Q  111 caaaactaaatccaatgccctgtctgtacagtactattcctgcaagatccgaagacacgttttaagtgtacatttaatgtagagaggaaatgccatgatt 210  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21026840 caaaactaaatccaatggactgtctgtacagtactattcctgcaagatccgaagacacgttttaagtgtacatttaatgtagagaggaaatgccatgatt 21026741  T
Q  211 gaactgtaaaggcaaaattagtggcagcattaatcagctgaaaatcatatgagcctcaggtaaactttagaaatgtacaatgaggtcaacttaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21026740 gaactgtaaaggcaaaattagtggcagcattaatcagctgaaaatcatatgagcctcaggtaaactttagaaatgtacaatgaggtcaacttaa 21026647  T

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