View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_high_29 (Length: 328)
Name: NF1319_high_29
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 24168349 - 24168069
Alignment:
| Q |
18 |
cataggcacacatgaatacattgatacgtgtggaagacaagttttttattttcttgtgtgnnnnnnnnnngggaaaaattactattttcttagttgaata |
117 |
Q |
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| T |
24168349 |
cataggcacacatgaatacattgatacgtgtggaagacaagttttttattttcttgtgtgtttttttt--gggaaaaattactattttcttagttgaata |
24168252 |
T |
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| Q |
118 |
ttcttagtcaaattcacacgttcaaggagaaaaggaaacaactgtaattctaaacaatgaatatgacaacttcacaatccacagaaacaaatggaatcaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24168251 |
ttcttagtcaaattcacacgttcaaggagaaaaggaaacaactgtaattctaaacaatgaatatgacaacttcacaatcaacagaaacaaatggaatcaa |
24168152 |
T |
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| Q |
218 |
cacagtaatctgacaagacgaattagccaaatacctggggttaggggggaagaaaagaccgtaaaagttggattggaaaaaat |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24168151 |
cacactaatctgacaagacgaattagccaaatacctggggttaggggggaagaaaagaccgtaaaagttggattggaaaaaat |
24168069 |
T |
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