View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_high_30 (Length: 312)
Name: NF1319_high_30
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 29852436 - 29852168
Alignment:
| Q |
15 |
tatagtggtgggtgtgatcatgctatgcatctagaggccattgatgcagtccgtaaagaagctgccgcagcacatgaggaggctgctgcagcacgtcagg |
114 |
Q |
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| T |
29852436 |
tatagtggtgggtgtgatcatgctatgcatctagaggccattgatgcagtccgtaaagaagctgccgcagcacatcaggaggctgctgcagcacgtcagg |
29852337 |
T |
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| Q |
115 |
aggcagccacagcacgccaggaagcagctgagtcgaaacaacattatcagcttttggaggagcagttgcgcaaagtaatgaagcacatgaaagctctaga |
214 |
Q |
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| T |
29852336 |
aggcagccacagcacgccaggaagcagctgagtcgaaacaacattatcagcttttggaggagcagttgcgcaaagtaatgaagcacatgaaagctctaga |
29852237 |
T |
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| Q |
215 |
gcgccaatcagcaggtgctttcacaagtgtgagtcaagctcgtagggcacgccaatcagcaggtgcttt |
283 |
Q |
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| T |
29852236 |
gcgccaatcagcaggtgctttcacaagtgtgagtcaagctcgtagggcacgccaatcagcaggtgcttt |
29852168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 29852187 - 29852142
Alignment:
| Q |
216 |
cgccaatcagcaggtgctttcacaagtgtgagtcaagctcgtaggg |
261 |
Q |
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| T |
29852187 |
cgccaatcagcaggtgctttcacaagtgtgagtcaagctcgcaggg |
29852142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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