View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1319_high_35 (Length: 276)

Name: NF1319_high_35
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1319_high_35
NF1319_high_35
[»] chr6 (2 HSPs)
chr6 (25-118)||(20088039-20088132)
chr6 (28-88)||(22749209-22749269)
[»] chr3 (1 HSPs)
chr3 (14-82)||(20000133-20000201)
[»] chr5 (1 HSPs)
chr5 (25-82)||(5539058-5539115)
[»] chr8 (1 HSPs)
chr8 (14-82)||(38810089-38810157)
[»] chr7 (1 HSPs)
chr7 (14-82)||(18573156-18573224)
[»] chr1 (1 HSPs)
chr1 (14-82)||(3400050-3400118)


Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 20088039 - 20088132
Alignment:
Q  25 caggtgaagctcacgtaacatgaacaatcaagttgaattatacatgttgaatagtcaacataaagaagaatctacgtggtatcatggtccatat 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  20088039 caggtgaagctcacgtaacatgaacaatcaagttgaattgtacatgttgaatagtcaacataaaaaagagtctacgtggtatcatcgtccatat 20088132  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 22749209 - 22749269
Alignment:
Q  28 gtgaagctcacgtaacatgaacaatcaagttgaattatacatgttgaatagtcaacataaa 88  Q
    ||||||||||| |||| | |||||||||| | | || |||||||||||||||||| |||||    
T  22749209 gtgaagctcacataacctaaacaatcaagcttagttgtacatgttgaatagtcaatataaa 22749269  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 20000201 - 20000133
Alignment:
Q  14 gctgagctcaacaggtgaagctcacgtaacatgaacaatcaagttgaattatacatgttgaatagtcaa 82  Q
    |||||||| | |||||| ||||||||| || ||||| |||||||||| || ||||||||||||||||||    
T  20000201 gctgagctaagcaggtggagctcacgtgacctgaacgatcaagttgagttgtacatgttgaatagtcaa 20000133  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 5539058 - 5539115
Alignment:
Q  25 caggtgaagctcacgtaacatgaacaatcaagttgaattatacatgttgaatagtcaa 82  Q
    |||||||||||||||| || ||||  |||||||||| || ||||||||||||||||||    
T  5539058 caggtgaagctcacgtgacctgaatgatcaagttgagttgtacatgttgaatagtcaa 5539115  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 38810089 - 38810157
Alignment:
Q  14 gctgagctcaacaggtgaagctcacgtaacatgaacaatcaagttgaattatacatgttgaatagtcaa 82  Q
    |||||||| | ||| || ||||||||| || ||||| ||||||||||  | ||||||||||||||||||    
T  38810089 gctgagctaagcagatggagctcacgtgacctgaacgatcaagttgagctgtacatgttgaatagtcaa 38810157  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 18573224 - 18573156
Alignment:
Q  14 gctgagctcaacaggtgaagctcacgtaacatgaacaatcaagttgaattatacatgttgaatagtcaa 82  Q
    |||||||| | |||||| ||||||||| || || || |||||| ||| || ||||||||||||||||||    
T  18573224 gctgagctaagcaggtggagctcacgtgacctgtacgatcaagctgagttgtacatgttgaatagtcaa 18573156  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 3400118 - 3400050
Alignment:
Q  14 gctgagctcaacaggtgaagctcacgtaacatgaacaatcaagttgaattatacatgttgaatagtcaa 82  Q
    |||||||| | |||||| ||||||||| || ||||| |||||| | | || ||||||||||||||||||    
T  3400118 gctgagctaagcaggtggagctcacgtgacctgaacgatcaagctaagttgtacatgttgaatagtcaa 3400050  T

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