View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1319_high_41 (Length: 252)
Name: NF1319_high_41
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_high_41 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 39295669 - 39295879
Alignment:
| Q |
14 |
agacagagaaagcaggaacatggctttggattcctccatggacaagaaacaattctcaagctattagttcaactaggactcaaagtcgagctagtagtca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39295669 |
agacagagaaagcaggaacatggctttggattcctccatggacaagaaacaattctcaagctattagttcaactaggactcaaagtcgagctagtagtca |
39295768 |
T |
|
| Q |
114 |
cttctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagctgaaattcaggacatggaaaataaccaagagagagttgaggtactacca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39295769 |
cttctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagctcaagttcaggacatggaaaataaccaagagaaagttgaggtactacca |
39295868 |
T |
|
| Q |
214 |
aagtctgacat |
224 |
Q |
| |
|
||||||||||| |
|
|
| T |
39295869 |
aagtctgacat |
39295879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 39288869 - 39288987
Alignment:
| Q |
97 |
agtcgagctagtagtcacttctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagctgaaattcaggacatggaaaataaccaagaga |
196 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||| |||||||||||||| | |
|
|
| T |
39288869 |
agtcgagcaagtagtcatttttgtgacatcaacattgatgctgatgatgttgagtatgaatttctagctgaagttcaagacatagaaaataaccaagaaa |
39288968 |
T |
|
| Q |
197 |
gagttgaggtactaccaaa |
215 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
39288969 |
aagttaaggtactaccaaa |
39288987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University