View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1319_high_43 (Length: 251)

Name: NF1319_high_43
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1319_high_43
NF1319_high_43
[»] chr8 (4 HSPs)
chr8 (13-205)||(3872154-3872346)
chr8 (80-206)||(3870768-3870894)
chr8 (83-207)||(17863465-17863589)
chr8 (155-207)||(5014834-5014886)
[»] chr1 (6 HSPs)
chr1 (13-91)||(46152071-46152149)
chr1 (71-206)||(26529508-26529643)
chr1 (83-206)||(36573962-36574085)
chr1 (102-212)||(35062558-35062668)
chr1 (70-156)||(35063547-35063633)
chr1 (120-210)||(49919676-49919766)
[»] chr4 (7 HSPs)
chr4 (65-206)||(30829927-30830068)
chr4 (83-206)||(52189186-52189309)
chr4 (72-206)||(52190296-52190430)
chr4 (125-193)||(31409326-31409394)
chr4 (13-80)||(45992158-45992225)
chr4 (155-206)||(41774644-41774695)
chr4 (83-203)||(8480886-8481006)
[»] chr3 (4 HSPs)
chr3 (70-210)||(9099556-9099696)
chr3 (83-206)||(20997633-20997756)
chr3 (125-208)||(19801784-19801867)
chr3 (71-165)||(37463720-37463814)
[»] chr7 (2 HSPs)
chr7 (65-150)||(41739678-41739763)
chr7 (83-150)||(41740964-41741031)
[»] chr5 (4 HSPs)
chr5 (65-207)||(38921454-38921596)
chr5 (65-150)||(35968616-35968701)
chr5 (83-149)||(35967405-35967471)
chr5 (71-215)||(16727803-16727947)
[»] chr2 (2 HSPs)
chr2 (83-206)||(31622043-31622166)
chr2 (83-209)||(40894809-40894935)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 3872154 - 3872346
Alignment:
Q  13 aattaaaatattcttatcagtctgccacctcagcatcattaaatgacatgtcaacaaagttaacagcaacttaacgttttggacgaaattgactaacggg 112  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||     
T  3872154 aattaaaatattcttatcagtctgtcacgtcagcatcattaaatgacatgtcaacaaagtgaacaacaacttaacgttttggacgaaattgactaacgga 3872253  T
Q  113 acaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccgacgtgcactttcaggggcccaaatgagagtttact 205  Q
    | ||||||||   ||||||||||||||||||||||||  || ||||||| ||| | ||| |||||||||||||| |||||| ||| |||||||    
T  3872254 ataaccattgagagagtttttggttcgtttaattgatacagggacgtggctgatagcgaggtgcactttcagggacccaaacgagggtttact 3872346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 3870894 - 3870768
Alignment:
Q  80 aacttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccgacgtgcact 179  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| |||||||||| || ||||||| ||| | |||  |||| |    
T  3870894 aacttaacgttttggacgaaattgactaacggaacaactattgggggagtttttgattcgcttaattgatctagggacgtggctgatagcgaaatgcatt 3870795  T
Q  180 ttcaggggcccaaatgagagtttactc 206  Q
    ||||||| ||||| |||| ||||||||    
T  3870794 ttcagggacccaagtgagggtttactc 3870768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 17863589 - 17863465
Alignment:
Q  83 ttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccgacgtgcactttc 182  Q
    ||||||||||||| | | |||||| |||| |||  ||||||||||||||||||||  ||||||||||| |  || |||| ||| | ||| ||||||||||    
T  17863589 ttaacgttttggatgcatttgactgacggaacatacattggaggagtttttggtttatttaattgatccaaggatgtggctgatagcgaggtgcactttc 17863490  T
Q  183 aggggcccaaatgagagtttactca 207  Q
    |||| |||||||||| |||||||||    
T  17863489 agggacccaaatgagggtttactca 17863465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 5014834 - 5014886
Alignment:
Q  155 gacgtggttgacaccgacgtgcactttcaggggcccaaatgagagtttactca 207  Q
    ||||||||||| | ||| || ||||||||||| |||||||||| |||||||||    
T  5014834 gacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactca 5014886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 46152071 - 46152149
Alignment:
Q  13 aattaaaatattcttatcagtctgccacctcagcatcattaaatgacatgtcaacaaagttaacagcaacttaacgttt 91  Q
    ||||||||||||||| | ||| |||||| ||| |||||||||||||||||||| ||||||||||| ||| |||||||||    
T  46152071 aattaaaatattcttgtgagtgtgccacatcaacatcattaaatgacatgtcatcaaagttaacaacaagttaacgttt 46152149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 26529643 - 26529508
Alignment:
Q  71 gttaacagcaacttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccg 170  Q
    ||||||| ||| ||||||||||||| | | ||||||||| | |||| |||||  ||||||||| ||||||||  |||||  || ||||||  ||| | ||    
T  26529643 gttaacatcaagttaacgttttggatgcatttgactaacagaacaaacattgagggagtttttagttcgttttcttgattcagggacgtgtctgatagcg 26529544  T
Q  171 acgtgcactttcaggggcccaaatgagagtttactc 206  Q
    | || ||||||||||| |||||||||| ||||||||    
T  26529543 aggtacactttcagggacccaaatgagggtttactc 26529508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 36574085 - 36573962
Alignment:
Q  83 ttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccgacgtgcactttc 182  Q
    ||||||||||||| | | ||||||||||| |||  |||||  ||||||||| ||||||||  |||||  || ||||||||||| | ||| || |||||||    
T  36574085 ttaacgttttggatgcatttgactaacggaacagacattgagggagtttttagttcgttttcttgattcagggacgtggttgatagcgaggtacactttc 36573986  T
Q  183 aggggcccaaatgagagtttactc 206  Q
    |||| || ||||||| ||||||||    
T  36573985 agggacctaaatgagtgtttactc 36573962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 212
Target Start/End: Complemental strand, 35062668 - 35062558
Alignment:
Q  102 tgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccgacgtgcactttcaggggcccaaatgagagtt 201  Q
    |||||||||| |||| |||||| ||||||||||||| |||||||||||  || || |||||||| | ||| ||| ||||| |||  |||||||||  |||    
T  35062668 tgactaacggaacaaacattgggggagtttttggttagtttaattgattcagggatgtggttgataacgaggtgaacttttaggaacccaaatgaaggtt 35062569  T
Q  202 tactcaaaata 212  Q
    ||||| |||||    
T  35062568 tactcgaaata 35062558  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 35063547 - 35063633
Alignment:
Q  70 agttaacagcaacttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagaga 156  Q
    |||||||| ||| ||||||||||||| | | ||||||||||  ||||  ||||| |||||||||||||||||| ||||||| |||||    
T  35063547 agttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttggttcgtttcattgatctagaga 35063633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 49919676 - 49919766
Alignment:
Q  120 ttggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccgacgtgcactttcaggggcccaaatgagagtttactcaaaa 210  Q
    |||| |||||||||||| ||||| ||||||| || || |||  ||| | ||| |  |||||||| || |||||||||||||||||||||||    
T  49919676 ttgggggagtttttggtgcgtttcattgatccagggaagtgactgatagcgatgcacactttcaaggacccaaatgagagtttactcaaaa 49919766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 30830068 - 30829927
Alignment:
Q  65 aacaaagttaacagcaacttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttg 164  Q
    |||| |||||||| ||| ||||||||||||| | | ||||||||||  |||| |||||| |||||||||||||||||| ||||||| || || |||  ||    
T  30830068 aacagagttaacaccaagttaacgttttggatgcatttgactaacgaaacaatcattgggggagtttttggttcgtttcattgatctagggatgtgcctg 30829969  T
Q  165 acaccgacgtgcactttcaggggcccaaatgagagtttactc 206  Q
    | | |||    ||||||||||| |||||||||| ||||||||    
T  30829968 atagcgagcaacactttcagggacccaaatgagggtttactc 30829927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 52189309 - 52189186
Alignment:
Q  83 ttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccgacgtgcactttc 182  Q
    ||||||||||||| | | ||||||||||| |||  |||||   ||||||||| || |||||||||||| || || |||| ||| | ||| ||||||||||    
T  52189309 ttaacgttttggatgcatttgactaacggaacatacattgagcgagtttttgatttgtttaattgatccagggatgtggctgatagcgaggtgcactttc 52189210  T
Q  183 aggggcccaaatgagagtttactc 206  Q
    |||| |||||||||| ||||||||    
T  52189209 agggacccaaatgagggtttactc 52189186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 52190296 - 52190430
Alignment:
Q  72 ttaacagcaacttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccga 171  Q
    |||||| ||| ||||||||||||| | | |||||||||   |||  |||||| |||||||||||||||||||||||||| |  ||  ||| ||| | |||    
T  52190296 ttaacaccaagttaacgttttggatgcatttgactaacaaaacagacattgggggagtttttggttcgtttaattgatccatggatctggctgatagcga 52190395  T
Q  172 cgtgcactttcaggggcccaaatgagagtttactc 206  Q
      ||||||||||||| |||||||||| ||||||||    
T  52190396 gatgcactttcagggacccaaatgagggtttactc 52190430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 31409394 - 31409326
Alignment:
Q  125 ggagtttttggttcgtttaattgatcaagagacgtggttgacaccgacgtgcactttcaggggcccaaa 193  Q
    ||||||||||||||||||| |||||| |  ||||||||||| | ||| |||||||||||||| ||||||    
T  31409394 ggagtttttggttcgtttatttgatccaaggacgtggttgatagcgaggtgcactttcagggacccaaa 31409326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 45992158 - 45992225
Alignment:
Q  13 aattaaaatattcttatcagtctgccacctcagcatcattaaatgacatgtcaacaaagttaacagca 80  Q
    ||||||||||||||| | ||| || ||| ||| ||||||||||||||||| || ||||||||||||||    
T  45992158 aattaaaatattcttgtgagtgtgtcacatcaacatcattaaatgacatgccatcaaagttaacagca 45992225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 41774695 - 41774644
Alignment:
Q  155 gacgtggttgacaccgacgtgcactttcaggggcccaaatgagagtttactc 206  Q
    ||||||||||| | ||| || ||||||||||| |||||||||||||||||||    
T  41774695 gacgtggttgatagcgaggtacactttcagggacccaaatgagagtttactc 41774644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 8480886 - 8481006
Alignment:
Q  83 ttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccgacgtgcactttc 182  Q
    ||||||||||||| |  | |||||||||| | |  | |||| |||||||||||| ||||| ||||||| || ||||||  ||| | |||  | |||||||    
T  8480886 ttaacgttttggatgggaatgactaacggaagagactttgggggagtttttggtgcgtttcattgatccagggacgtgactgatagcgagatacactttc 8480985  T
Q  183 aggggcccaaatgagagttta 203  Q
    |||| | ||||||||||||||    
T  8480986 agggactcaaatgagagttta 8481006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 210
Target Start/End: Complemental strand, 9099696 - 9099556
Alignment:
Q  70 agttaacagcaacttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacacc 169  Q
    ||||||||  || ||||||||||||||  | ||||||||||| || | ||||| | ||||||||||||||||| ||||||  || || ||| |||| | |    
T  9099696 agttaacactaagttaacgttttggacttatttgactaacggaaccaacattgaaagagtttttggttcgtttcattgattcagggatgtgcttgatagc 9099597  T
Q  170 gacgtgcactttcaggggcccaaatgagagtttactcaaaa 210  Q
    || || |||||| |||| |||||||||| ||||||||||||    
T  9099596 gaggtacactttaagggacccaaatgagggtttactcaaaa 9099556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 20997756 - 20997633
Alignment:
Q  83 ttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccgacgtgcactttc 182  Q
    ||||||||||||||  | ||||||||||  || | ||||| |||||||||||||| |||| |||||||  | || ||| |||| | ||| || || ||||    
T  20997756 ttaacgttttggacttatttgactaacgaaaccaacattgaaggagtttttggtttgttttattgatcctgggatgtgcttgatagcgaggtacattttc 20997657  T
Q  183 aggggcccaaatgagagtttactc 206  Q
    |||| |||||||||| ||||||||    
T  20997656 agggacccaaatgagggtttactc 20997633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 19801867 - 19801784
Alignment:
Q  125 ggagtttttggttcgtttaattgatcaagagacgtggttgacaccgacgtgcactttcaggggcccaaatgagagtttactcaa 208  Q
    |||||||||||||||||||||||||| |  ||||| | ||| | ||| || ||||||||||| ||  |||||| ||||||||||    
T  19801867 ggagtttttggttcgtttaattgatctaaggacgtagctgatagcgaggtacactttcagggaccggaatgagggtttactcaa 19801784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 37463814 - 37463720
Alignment:
Q  71 gttaacagcaacttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttga 165  Q
    ||||||| ||| ||||||||||||||| || ||||||| || | |  |||| || |||||||||| |||||| ||||||| || |||||| ||||    
T  37463814 gttaacaccaagttaacgttttggacgtaaatgactaatggaagagacattagatgagtttttggatcgtttcattgatccagggacgtgcttga 37463720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 41739763 - 41739678
Alignment:
Q  65 aacaaagttaacagcaacttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatc 150  Q
    |||| |||||||| ||| ||||||||||||| | | ||||||||||  |||| |||||| |||||||||||||||||| |||||||    
T  41739763 aacagagttaacaccaagttaacgttttggatgcatttgactaacgaaacaatcattgggggagtttttggttcgtttcattgatc 41739678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 41740964 - 41741031
Alignment:
Q  83 ttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatc 150  Q
    |||||||||||||||    |||||||||| ||||  ||||| ||||||||||||| ||||||||||||    
T  41740964 ttaacgttttggacgtggatgactaacggaacaaatattgggggagtttttggttagtttaattgatc 41741031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 207
Target Start/End: Complemental strand, 38921596 - 38921454
Alignment:
Q  65 aacaaagttaacagcaacttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttg 164  Q
    |||| |||||||| ||| ||||||||||||| | | ||||||||||  |||| |||||| |||||||||||||| ||| ||||||| || || |||  ||    
T  38921596 aacagagttaacaccaagttaacgttttggatgcatttgactaacgaaacaatcattgggggagtttttggttcatttcattgatctagggatgtgcctg 38921497  T
Q  165 acaccgacgtgcactttcaggggcccaaatgagagtttactca 207  Q
    | |  ||    ||||||||||| |||||||||| |||||||||    
T  38921496 atagtgagcaacactttcagggacccaaatgagggtttactca 38921454  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 35968616 - 35968701
Alignment:
Q  65 aacaaagttaacagcaacttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatc 150  Q
    ||||||||||||| ||| ||||||||||||| | | |||||||||   ||||  ||||| |||||||||||||||||| |||||||    
T  35968616 aacaaagttaacaccaagttaacgttttggatgcatttgactaacaaaacaataattgggggagtttttggttcgtttcattgatc 35968701  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 35967471 - 35967405
Alignment:
Q  83 ttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgat 149  Q
    |||| ||||||||||   ||||||||||| |||| |||||| ||||||||||||| |||||||||||    
T  35967471 ttaatgttttggacgtggttgactaacggaacaaacattgggggagtttttggttagtttaattgat 35967405  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 16727947 - 16727803
Alignment:
Q  71 gttaacagcaacttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccg 170  Q
    ||||||| ||| |||| |||||||| | | ||||||||||| |||  |||||  | ||||||| ||||||||  |||||  ||  |||||| ||| | ||    
T  16727947 gttaacatcaagttaatgttttggatgcatttgactaacggaacagacattgaggaagtttttagttcgttttcttgattcaggaacgtggctgatagcg 16727848  T
Q  171 acgtgcactttcaggggcccaaatgagagtttactcaaaataata 215  Q
    | || ||||||||| | |||||||||| ||||||| |||| ||||    
T  16727847 aggtacactttcagcgacccaaatgagggtttacttaaaaaaata 16727803  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 31622043 - 31622166
Alignment:
Q  83 ttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccgacgtgcactttc 182  Q
    ||||||||||||| | | ||||| ||||| |||| |||||  ||||||||| ||| ||||  |||||  || ||||||||||| | ||| || |||||||    
T  31622043 ttaacgttttggatgcatttgacaaacggaacaaacattgagggagtttttagtttgttttcttgattcagggacgtggttgataacgaggtacactttc 31622142  T
Q  183 aggggcccaaatgagagtttactc 206  Q
    |||| ||||||| || ||||||||    
T  31622143 agggacccaaataagggtttactc 31622166  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 209
Target Start/End: Original strand, 40894809 - 40894935
Alignment:
Q  83 ttaacgttttggacgaaattgactaacgggacaaccattggaggagtttttggttcgtttaattgatcaagagacgtggttgacaccgacgtgcactttc 182  Q
    |||||||||||||||  | |||||||||| | |  |||||| ||||||||| |||||||| ||||||| || |||||   ||| | ||| || ||||||     
T  40894809 ttaacgttttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtacctgatagcgaggtacactttt 40894908  T
Q  183 aggggcccaaatgagagtttactcaaa 209  Q
    ||||  ||||||||| |||||||||||    
T  40894909 agggatccaaatgagggtttactcaaa 40894935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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