View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1319_high_5 (Length: 543)

Name: NF1319_high_5
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1319_high_5
NF1319_high_5
[»] chr5 (12 HSPs)
chr5 (1-533)||(30047870-30048400)
chr5 (2-389)||(16597952-16598337)
chr5 (5-342)||(12019533-12019870)
chr5 (5-342)||(37659471-37659808)
chr5 (5-342)||(7102950-7103287)
chr5 (5-342)||(16794913-16795250)
chr5 (5-342)||(10275281-10275617)
chr5 (435-517)||(16598337-16598420)
chr5 (176-339)||(30696043-30696206)
chr5 (176-339)||(40370994-40371157)
chr5 (394-488)||(40371213-40371307)
chr5 (394-470)||(12019404-12019480)
[»] chr3 (5 HSPs)
chr3 (7-339)||(22930885-22931217)
chr3 (5-294)||(9698373-9698662)
chr3 (5-342)||(54170920-54171257)
chr3 (5-342)||(21847872-21848209)
chr3 (5-342)||(43548459-43548796)
[»] chr4 (7 HSPs)
chr4 (11-488)||(20290099-20290577)
chr4 (5-294)||(27186931-27187220)
chr4 (5-342)||(31355423-31355760)
chr4 (193-342)||(44147802-44147951)
chr4 (5-179)||(53977763-53977938)
chr4 (203-342)||(43682953-43683092)
chr4 (5-38)||(43682756-43682789)
[»] chr8 (8 HSPs)
chr8 (203-455)||(44912963-44913216)
chr8 (125-419)||(10683285-10683580)
chr8 (5-342)||(43811059-43811396)
chr8 (5-342)||(201260-201597)
chr8 (5-342)||(316097-316434)
chr8 (5-342)||(30409379-30409716)
chr8 (5-111)||(1287802-1287908)
chr8 (5-296)||(28647201-28647492)
[»] chr7 (3 HSPs)
chr7 (5-342)||(27757641-27757978)
chr7 (100-341)||(730353-730594)
chr7 (5-342)||(7943659-7943996)
[»] chr2 (4 HSPs)
chr2 (5-342)||(13270104-13270441)
chr2 (5-342)||(8051636-8051973)
chr2 (5-342)||(36671295-36671632)
chr2 (65-294)||(35953728-35953957)
[»] scaffold0044 (2 HSPs)
scaffold0044 (5-342)||(48441-48778)
scaffold0044 (394-470)||(48831-48907)
[»] chr6 (3 HSPs)
chr6 (5-342)||(8319080-8319417)
chr6 (5-342)||(17881055-17881392)
chr6 (5-278)||(27571308-27571581)
[»] chr1 (2 HSPs)
chr1 (5-342)||(39794639-39794976)
chr1 (5-342)||(26312257-26312594)
[»] scaffold0027 (1 HSPs)
scaffold0027 (136-360)||(54124-54347)


Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 30048400 - 30047870
Alignment:
Q  1 taaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  30048400 taaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaatgaactctgcatttcttcaattttcaaagttttcaca 30048301  T
Q  101 tcctttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgc 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048300 tcctttgatttttttacggccaccactataaaataaaatcttggagatagtgttcttatgatcgtctcaataatttgttaatcagagattgtttcactgc 30048201  T
Q  201 atgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaaga 300  Q
    |||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048200 atgccttcatttg---tacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaaga 30048104  T
Q  301 ctgaagttttatctccttcaccttctcatctccttcatgatatttctctagaatatccaaacttcctttgatcttgtagccgtagaaattttatcaaaat 400  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048103 ccgaagctttatctccttcaccttctcatctccttcatgatatttctctagaatatccaaacttcctttgatcttgtagccgtagaaattttatcaaaat 30048004  T
Q  401 ttcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgcaattctttgtacttcag-tatattcctacc 499  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| |||    
T  30048003 ttcctccatcaacaccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgcaattctttgtacttcagttgcattccaacc 30047904  T
Q  500 caattcatcagaaccattttgcacaatcttcatc 533  Q
    |||||||||| |||||||||||||||||||||||    
T  30047903 caattcatcaaaaccattttgcacaatcttcatc 30047870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 2 - 389
Target Start/End: Original strand, 16597952 - 16598337
Alignment:
Q  2 aaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacat 101  Q
    ||||||||||||||| |||||||||| ||||||||  |     | |||||| |||| ||||||||||||| || ||||| ||| |||||||||| |||||    
T  16597952 aaagcttgttgaatttatctttcactgcttctttccca-----tcaattcatgtgcttccaaagaactcttcagttcttgaatcttcaaagttttcacat 16598046  T
Q  102 cctttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgca 201  Q
    | || ||||||| || | |||| ||||| |||| ||| ||| |||||||  |||| |||||| |||||| |||||||  ||| || || |||||||| ||    
T  16598047 ctttcgattcttgtatgtccactactatgaaatcaaaccttagagatagagttctcatgatcttctcaacaatttgtggatctgaaatagtttcactcca 16598146  T
Q  202 tgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagac 301  Q
    |||||||||| ||||| |||||||||||| |||| |||||||||||| |||||| ||||| ||||||||||||| | | | ||||||||||| ||||||     
T  16598147 tgccttcatccgattttcaacattaatcatcttagagatgtaatcaacaatcttctgctcatcttccatttgcaactattcaaatttccttcataaagag 16598246  T
Q  302 tgaagttttatctccttcaccttctcatctccttcatg--atatttctctagaatat-ccaaacttcctttgatcttgtagccgtagaaat 389  Q
    ||||| ||||||| ||||||||| |||||||||||| |  |||||| || || |||| |||| ||||| ||||| |||||||| |||||||    
T  16598247 tgaagctttatctacttcaccttttcatctccttcacgatatatttgtcaagtatatcccaagcttccattgattttgtagccttagaaat 16598337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 12019870 - 12019533
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  12019870 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 12019771  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||||| |||||| || ||    
T  12019770 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgattgcttcactacaagc 12019671  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| |||||| |  ||| ||||||| |||  |||||| || || ||||||||||||||||| | |||||||||||| | ||| |||    
T  12019670 cttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcaattcaaatttccttctcagagattga 12019571  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  12019570 agcttaatcaacttcactttatcatcaccttcatgata 12019533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 37659808 - 37659471
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||| ||||  || ||||| ||||| || |  ||||| |    
T  37659808 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactttgcagctcctcaatcttcaatgtcttaacatctt 37659709  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||||| |||||| || ||    
T  37659708 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgattgcttcactacaagc 37659609  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| |||||| |  ||| ||||||| |||  |||||| || || ||||||||||||||||| | |||||||||||| | ||| |||    
T  37659608 cttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcaattcaaatttccttctcagagattga 37659509  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  37659508 agcttaatcaacttcactttatcatcaccttcatgata 37659471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 7102950 - 7103287
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  7102950 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 7103049  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  7103050 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 7103149  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || |||||||||||| | ||| |||    
T  7103150 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattga 7103249  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  7103250 agcttaatcaacttcactttatcatcaccttcatgata 7103287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 16795250 - 16794913
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  16795250 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 16795151  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  16795150 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 16795051  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || |||||||||||| | ||| |||    
T  16795050 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattga 16794951  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  16794950 agcttaatcaacttcactttatcatcaccttcatgata 16794913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 10275617 - 10275281
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||| ||| ||||||||||  |  || |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||    
T  10275617 gcttgttgaattgatcttt-actgcttctttcagttaccatcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcct 10275519  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |   | ||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || | || ||||| ||| | |||||| || ||    
T  10275518 ttgattcatgaattactaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatcttttgatcagtgatagcttcactacaagc 10275419  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||  |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||| ||||||| || ||||||||||||||  || |||    
T  10275418 cttcatctgatacacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatctgcatcagctcaaatttccttcttagtgattga 10275319  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  10275318 agcttaatcaacttcactttatcatcaccttcatgata 10275281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 517
Target Start/End: Original strand, 16598337 - 16598420
Alignment:
Q  435 tgctttgcaatccttcttctttaactccttatgtgcaattctttgtacttcag-tatattcctacccaattcatcagaaccatt 517  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||||| || |  ||| | ||||||||||||| |||||||    
T  16598337 tgctttgcaatccttcttctttaactccttatgcgcagttctctgtactttagttgcatttccacccaattcatcataaccatt 16598420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 339
Target Start/End: Complemental strand, 30696206 - 30696043
Alignment:
Q  176 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 275  Q
    |||| ||||| ||||| |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  30696206 tgttgatcagtgattgcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgca 30696107  T
Q  276 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatg 339  Q
    ||| || |||||||||||| |  || ||||| || |||  |||||| || ||||| ||||||||    
T  30696106 tcagctcaaatttccttctcagtgattgaagcttaatcaacttcactttatcatcaccttcatg 30696043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 339
Target Start/End: Original strand, 40370994 - 40371157
Alignment:
Q  176 tgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgca 275  Q
    |||| ||||| ||||| |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||    
T  40370994 tgttgatcagtgattgcttcactacaagccttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgca 40371093  T
Q  276 tcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctccttcatg 339  Q
    |||  | |||||||||||| |  |||||||| || |||   ||||| || ||||| ||||||||    
T  40371094 tcagttcaaatttccttctcagtgactgaagcttaatcaatttcactttatcatcaccttcatg 40371157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 40371213 - 40371307
Alignment:
Q  394 tcaaaatttcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgcaattctttgtacttcagt 488  Q
    ||||| |||||| ||||||  | ||||||||| |||||||  || |||||||| |||||||| || ||||| |||||  | ||||||||||||||    
T  40371213 tcaaagtttccttcatcaagactttgttgaatcaagaacagagccttgcaatctttcttcttcaattccttgtgtgcgttcctttgtacttcagt 40371307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 470
Target Start/End: Complemental strand, 12019480 - 12019404
Alignment:
Q  394 tcaaaatttcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgc 470  Q
    ||||| |||||| ||||||  | ||||||||| |||||||  || |||||||| |||||||| || |||||||||||    
T  12019480 tcaaagtttccttcatcaagactttgttgaatcaagaacagagccttgcaatctttcttcttcaattccttatgtgc 12019404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 4e-64; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 7 - 339
Target Start/End: Original strand, 22930885 - 22931217
Alignment:
Q  7 ttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatccttt 106  Q
    ||||||||||||||||||||||||||||||| |||  || |||||| |||||||||||||||| |||| ||||||||| ||||| || | ||||||  ||    
T  22930885 ttgttgaattgatctttcactacttctttcatacaccatcaattcatgtgcctccaaagaactatgcaattcttcaatcttcaaggtattcacatctgtt 22930984  T
Q  107 gattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgcct 206  Q
    ||||||| || |||||| |||||||||  | | |||| |||||   || | || ||| ||||||  ||||  | |||||| |||||| |||| ||  |||    
T  22930985 gattcttgtatggccacaactataaaagcagaccttgaagataaagttatcataatcttctcaactattttcttatcagaaattgttccactacaaacct 22931084  T
Q  207 tcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactgaag 306  Q
    |||||||||||||||||||||||| | |  |||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||  |||||||    
T  22931085 tcatctgatttacaacattaatcagcatggagatgtaatcaacaatctttttctcatcttccatttgcatcaactcaaatttccttcttaataactgaag 22931184  T
Q  307 ttttatctccttcaccttctcatctccttcatg 339  Q
     ||||||| |||||||||  |||||||||||||    
T  22931185 ctttatctgcttcaccttagcatctccttcatg 22931217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 5 - 294
Target Start/End: Complemental strand, 9698662 - 9698373
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    |||| |||||||||||||||||| ||||||||||  |  || |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||    
T  9698662 gctttttgaattgatctttcactgcttctttcagttaccatcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcct 9698563  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    |||||||||  |  || ||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  9698562 ttgattcttgaattgctaccacaatgaaattaaaccttgaagatagagtcctcataatcttttcaactatatgttgatcagtgatagcttcactacaagc 9698463  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttct 294  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || ||||||||||||| || || ||||||||||||    
T  9698462 cttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcaccagctcaaatttccttct 9698373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 54170920 - 54171257
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  54170920 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcaactcctcaatcttcaatgtcttaacatctt 54171019  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  54171020 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 54171119  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  ||||||||| || |||||||||||||||| || |||||||||||| | ||| |||    
T  54171120 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttttgatcatcttccatttgcatcagctcaaatttccttctcagagattga 54171219  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  54171220 agcttaatcaacttcactttatcatcaccttcatgata 54171257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 21848209 - 21847872
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || |||||||| |  || ||||| ||||| || |  ||||| |    
T  21848209 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgtagctcctcaatcttcaatgtcttaacatctt 21848110  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| |||||| || || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  21848109 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagataggatcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 21848010  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| | |  |||||| || || |||||||||||||||| || |||||||||||| | ||| |||    
T  21848009 cttcatctgattcacaagattgatgagtttagagatgtacttagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattga 21847910  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  21847909 agcttaatcaacttcactttatcatcaccttcatgata 21847872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 43548796 - 43548459
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||||| ||||||||||  |  ||  ||||| |||| || || |||| ||||| ||| ||||| ||||| || | ||||||||    
T  43548796 gcttgttgaattgatctttcactgcttctttcagttaccatcgattcatgtgcttctaatgaacactgcaattcctcaatcttcaatgtcttcacatcct 43548697  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |     || ||||| || |||||||| |||| ||||||  | || || ||| | ||||  || | || ||||| ||| | |||||| || ||    
T  43548696 ttgattcctgagttgctaccacaatgaaataaaaccttgaagatagagtcctcataatcttttcaactatctattgatcagtgatagcttcactacaagc 43548597  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| | ||||| |||  ||||||||| || |||||||| ||||||| || ||||||||||||||  || |||    
T  43548596 cttcatctgattcacaagattgatgagtttagatatgtattcagaaatcttttgatcatcttccatctgcatcagctcaaatttccttcttagtgattga 43548497  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||   ||||| || ||||| |||||||||||    
T  43548496 agcttaatcaatttcactttatcatcaccttcatgata 43548459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 11 - 488
Target Start/End: Complemental strand, 20290577 - 20290099
Alignment:
Q  11 tgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgatt 110  Q
    ||||||||||||||||| ||||| ||| | |  || | || | | |||||||| ||||| | || ||||||||| |||||||||| ||||||||||||||    
T  20290577 tgaattgatctttcactgcttctctcataaaccatcagtttatgagcctccaaggaacttttcaattcttcaatcttcaaagttttcacatcctttgatt 20290478  T
Q  111 cttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgccttcat 210  Q
    | |  |  || ||||||||||||| |||||||||||||||| |||| |||||  |||||| |||||||| ||| |  | |  ||| |   | || || ||    
T  20290477 catgaattgcaaccactataaaatcaaatcttggagatagtgttctcatgattttctcaacaatttgttgatctgtaactacttctccataagcttttat 20290378  T
Q  211 ctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactgaagtttt 310  Q
    ||||||||||||||| || |  ||  |||||||||||  |||||| | ||| || |||||||||||||| ||||| |||||||| || |||||||| |||    
T  20290377 ctgatttacaacattgattagtttggagatgtaatcagcaatcttcttctcatcctccatttgcatcaatttaaacttccttctcaatgactgaagcttt 20290278  T
Q  311 atctccttcaccttctcatctccttcatgatatttctctagaata-tccaaacttcctttgatcttgtagccgtagaaattttatcaaaatttcctccat 409  Q
    |||| || |||||| ||||| |||||||||||||| || |||||| |  || |||||||||||||||| |   |||||||| | | ||| |||||| |||    
T  20290277 atctgctccaccttatcatcaccttcatgatatttttccagaatatttgaagcttcctttgatcttgtggatttagaaattcttttaaagtttccttcat 20290178  T
Q  410 caacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgcaattctttgtacttcagt 488  Q
    |||  |  | |||||||| ||||| | | ||||||||||||||||||||||| ||||||||| | || || ||||||||    
T  20290177 caagactctattgaatgaggaacaattccttgcaatccttcttctttaactctttatgtgcattcctatgcacttcagt 20290099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 5 - 294
Target Start/End: Complemental strand, 27187220 - 27186931
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    |||| |||||||||||||||||| ||||||||||  |  || |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||    
T  27187220 gctttttgaattgatctttcactgcttctttcagttaccatcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcct 27187121  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    |||||||||  |  || ||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  27187120 ttgattcttgaattgctaccacaatgaaattaaaccttgaagatagagtcctcataatcttttcaactatatgttgatcagtgatagcttcactacaagc 27187021  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttct 294  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || ||||||||||||| || || ||||||||||||    
T  27187020 cttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcaccagctcaaatttccttct 27186931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 31355760 - 31355423
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||||| ||| ||||||  |  || |||||| |||| ||||| |||||||||| ||||||||| ||||| || | ||||||||    
T  31355760 gcttgttgaattgatctttcacttcttgtttcagttaccatcaattcatgtgcttccaatgaactctgcaattcttcaatcttcaatgtcttcacatcct 31355661  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  || || || || |||| ||| |||| ||||||  | || || ||| ||||||  || |||| ||||  ||| | ||||   || ||    
T  31355660 ttgattcctgaattgctactacaatgaaatcaaaccttgaagatagggtcctcataatcttctcaactatctgttgatcattgatagcttcataacaagc 31355561  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||| ||| |||| ||| || |  ||| ||||||| |||  |||||| |  || |||||||| ||||||| || |||||||||||| |  ||||||    
T  31355560 cttcatctaattcacaagattgatgagtttagagatgtattcagaaatcttctaatcatcttccatctgcatcagctcaaatttccttctcagtgactga 31355461  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    ||||| |||  |||||| || ||||| |||||||||||    
T  31355460 agtttaatcatcttcactttatcatcaccttcatgata 31355423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 342
Target Start/End: Complemental strand, 44147951 - 44147802
Alignment:
Q  193 ttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttcctt 292  Q
    |||||| || |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || ||||||||||    
T  44147951 ttcactacaagccttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttcctt 44147852  T
Q  293 cttaaagactgaagttttatctccttcaccttctcatctccttcatgata 342  Q
    || | ||| ||||| || |||  |||||| || ||||| |||||||||||    
T  44147851 ctcagagattgaagcttaatcaacttcactttatcatcaccttcatgata 44147802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 53977938 - 53977763
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||| ||||||||||||||| ||||| |   | || || |||||| | |  ||||| ||||| |||| ||||||||| |||||| ||| ||||||||    
T  53977938 gcttgttaaattgatctttcactccttctcttgaaaatcatcaattcatgagtttccaatgaactttgcaattcttcaatcttcaaatttttcacatcct 53977839  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttgga-gatagtattcttatgatcgtctcaataatttgtt 179  Q
    |||||||||  |  || ||||||||||||| |||| || || |||||| |||| |||||  |||||| ||||||||    
T  53977838 ttgattcttgaattgcaaccactataaaatcaaatattagatgatagtgttctaatgattttctcaacaatttgtt 53977763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 342
Target Start/End: Original strand, 43682953 - 43683092
Alignment:
Q  203 gccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagact 302  Q
    |||||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || ||||||||||| ||||  | |||||||||||| |  || |    
T  43682953 gccttcatctgattcacaagattgatgaggttagagatgtattcagaaatcttctgatcatcttccatttgtatcagttcaaatttccttctcagtgatt 43683052  T
Q  303 gaagttttatctccttcaccttctcatctccttcatgata 342  Q
    ||||||| |||  |||||| || ||||| |||||||||||    
T  43683053 gaagtttaatcaacttcactttatcatcaccttcatgata 43683092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 43682756 - 43682789
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcag 38  Q
    ||||||||||||||||||||||| ||||||||||    
T  43682756 gcttgttgaattgatctttcactgcttctttcag 43682789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 203 - 455
Target Start/End: Original strand, 44912963 - 44913216
Alignment:
Q  203 gccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagact 302  Q
    |||||||||||||||||||||||| |||  ||  |||||||||||| |||||||||||| ||||||||||||||||  | ||| || |||||||||||||    
T  44912963 gccttcatctgatttacaacattattcagtttggagatgtaatcaacaatcttttgctcatcttccatttgcatcatttcaaactttcttcttaaagact 44913062  T
Q  303 gaagttttatctccttcaccttctcatctccttcatgatatttctctagaatatccaaa-cttcctttgatcttgtagccgtagaaattttatcaaaatt 401  Q
    |||| |||||||| ||||||||  |||| ||||||| | || | || |||||||||||| | ||||| ||  |||| |   | || ||| | ||||||||    
T  44913063 gaagctttatctctttcaccttagcatcaccttcataacatctttcaagaatatccaaagcctccttagactttgtggattttgagattctttcaaaatt 44913162  T
Q  402 tcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctt 455  Q
    ||||  ||| || | ||||||||||||||| | ||| ||||| |||||||||||    
T  44913163 tcctgaatctacactttgttgaatgaagaaaagtgccttgcagtccttcttctt 44913216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 125 - 419
Target Start/End: Original strand, 10683285 - 10683580
Alignment:
Q  125 actataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgccttcatctgatttacaacat 224  Q
    ||||| |||| ||||||||| |||||  |||  |||||| ||| || ||| |||||||| || ||||||| |||||||| |||||||||||| | || ||    
T  10683285 actatgaaatcaaatcttggggatagagttcacatgatcttctaaacaatatgttaatctgaaattgtttaactgcatgtcttcatctgattgaaaatat 10683384  T
Q  225 taatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactgaagttttatctccttcacctt 324  Q
    ||||||  ||  | |||||||||| ||| ||||  || |||||||| |||||||  |||||||||||||||| ||||||||| || |||| |||||||||    
T  10683385 taatcagtttggatatgtaatcaacaatttttttatcatcttccatctgcatcagtttaaatttccttcttagagactgaagcttgatctgcttcacctt 10683484  T
Q  325 ctcatctccttcatgatatttctctagaatat-ccaaacttcctttgatcttgtagccgtagaaattttatcaaaatttcctccatcaacgccttg 419  Q
     ||||| |||||| |||| |  ||||| |||| |||  ||||||||| | ||||| || | || ||||| ||||| |||| ||||| ||| |||||    
T  10683485 ttcatcaccttcacgatactcttctagtatatcccatgcttcctttgtttttgtaacctttgatattttctcaaagtttcttccattaacaccttg 10683580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 43811059 - 43811396
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  43811059 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 43811158  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    | ||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||||| |||||| || ||    
T  43811159 tcgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgattgcttcactacaagc 43811258  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| |||||| |  ||| ||||||| |||  |||||| || || ||||||||||||||||| | |||||||||||| | ||| |||    
T  43811259 cttcatctgattcacaagattaatgagtttagagatgtattcagaaatcttctgatcatcttccatttgcatcaattcaaatttccttctcagagattga 43811358  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  43811359 agcttaatcaacttcactttatcatcaccttcatgata 43811396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 201260 - 201597
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  201260 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 201359  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  201360 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 201459  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || |||||||||||| | ||| |||    
T  201460 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattga 201559  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  201560 agcttaatcaacttcactttatcatcaccttcatgata 201597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 316097 - 316434
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  316097 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 316196  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  316197 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 316296  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || |||||||||||| | ||| |||    
T  316297 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattga 316396  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  316397 agcttaatcaacttcactttatcatcaccttcatgata 316434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 30409379 - 30409716
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  30409379 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 30409478  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  30409479 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 30409578  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || |||||||||||| | ||| |||    
T  30409579 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattga 30409678  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  30409679 agcttaatcaacttcactttatcatcaccttcatgata 30409716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 1287908 - 1287802
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||| ||||||||||||||| ||||||||||  |  || |||||| |||| || || |||||||||| ||| ||||| ||||| || | ||||||||    
T  1287908 gcttgttaaattgatctttcactgcttctttcagttaccatcaattcatgtgcttctaatgaactctgcaattcctcaatcttcaatgtcttcacatcct 1287809  T
Q  105 ttgattc 111  Q
    |||||||    
T  1287808 ttgattc 1287802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 296
Target Start/End: Complemental strand, 28647492 - 28647201
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||| || |  |||||||| ||||| || |  ||||| |    
T  28647492 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactttgtagctcttcaatcttcaatgtcttaacatctt 28647393  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||||| |||||| || ||    
T  28647392 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgattgcttcactacaagc 28647293  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttctta 296  Q
    |||||||||||| |||| ||| ||    ||| ||||||| |||  |||||| || || ||||||||||||||||  | ||||||||||||||    
T  28647292 cttcatctgattcacaagattgatgtgtttagagatgtattcagaaatcttctgatcatcttccatttgcatcagttcaaatttccttctta 28647201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 27757978 - 27757641
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  27757978 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcaactcctcaatcttcaatgtcttaacatctt 27757879  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  27757878 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacacgc 27757779  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || |||||||||||| | ||| |||    
T  27757778 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattga 27757679  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    ||||| |||  |||||| || ||||| |||||||||||    
T  27757678 agtttaatcaacttcactttatcatcaccttcatgata 27757641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 341
Target Start/End: Complemental strand, 730594 - 730353
Alignment:
Q  100 atcctttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactg 199  Q
    ||||||||||||||  |  || ||||||||||||| ||||||||  |||||| |||| || ||  |||||| |||||||| |||||  |||| ||| |      
T  730594 atcctttgattcttgaattgcaaccactataaaatcaaatcttgatgatagtgttctcatcattttctcaacaatttgttgatcagtcattgcttctcca 730495  T
Q  200 catgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaag 299  Q
    || |||||||||||||| |||| ||| || |  ||  |||| || |||  ||| |||||||| || ||||| |||||||| | ||| |||||||| ||||    
T  730494 caagccttcatctgattcacaatattgatgagtttggagatatattcagcaatattttgctcttcctccatctgcatcaattcaaacttccttctcaaag 730395  T
Q  300 actgaagttttatctccttcaccttctcatctccttcatgat 341  Q
    ||||||| || |||  ||||||||| ||||| ||||||||||    
T  730394 actgaagcttaatcaacttcaccttatcatcgccttcatgat 730353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 7943659 - 7943996
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  7943659 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 7943758  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  7943759 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 7943858  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || |||||||||||| | ||| |||    
T  7943859 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattga 7943958  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  7943959 agcttaatcaacttcactttatcatcaccttcatgata 7943996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 13270104 - 13270441
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||||| ||||||||||  |  || |||||| |||| || || |||||||||| ||||||||| ||||| || | |||||| |    
T  13270104 gcttgttgaattgatctttcactgcttctttcagttaccatcaattcatgtgcttctaatgaactctgcaattcttcaatcttcaatgtcttcacatctt 13270203  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  || ||||| || |||| ||| |||| ||||||  | || || ||| | ||||  ||||||| ||||  ||| | |||||| || ||    
T  13270204 ttgattcctgaattgctaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatttgttgatcaatgatagcttcactacaagc 13270303  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    ||||| |||||| |||| ||| || |  ||| ||||||| |||  |||||| |  || |||||||||||||||| || |||||||||||| |  || |||    
T  13270304 cttcacctgattcacaagattgatgagtttagagatgtattcagaaatcttctaatcatcttccatttgcatcagctcaaatttccttctcagtgattga 13270403  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  13270404 agcttaatcaacttcactttatcatcaccttcatgata 13270441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 8051973 - 8051636
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  8051973 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 8051874  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  8051873 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 8051774  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || |||||||||||| | ||| |||    
T  8051773 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattga 8051674  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  8051673 agcttaatcaacttcactttatcatcaccttcatgata 8051636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 36671632 - 36671295
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  36671632 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 36671533  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  36671532 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 36671433  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || |||||||||||| | ||| |||    
T  36671432 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattga 36671333  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  36671332 agcttaatcaacttcactttatcatcaccttcatgata 36671295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 294
Target Start/End: Original strand, 35953728 - 35953957
Alignment:
Q  65 gaactctgcatttcttcaattttcaaagtttgcacatcctttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcg 164  Q
    |||||||||| ||| ||||| ||||| || | ||||||||||||||| |  |  || ||||| || |||| ||| |||| ||||||  | || || |||     
T  35953728 gaactctgcaattcctcaatcttcaatgtcttcacatcctttgattcctgaattgctaccacaatgaaatcaaaccttgaagatagggtcctcataatct 35953827  T
Q  165 tctcaataatttgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctc 264  Q
    | ||||  ||||||| ||||| ||| | |||||| || |||||||||| ||| |||| ||| || |  ||| ||||||| |||  |||||| || || ||    
T  35953828 tttcaactatttgttgatcagtgatagcttcactacaagccttcatctaattcacaagattgatgagtttagagatgtattcagaaatcttctgatcatc 35953927  T
Q  265 ttccatttgcatcaacttaaatttccttct 294  Q
    |||||||||||||| || ||||||||||||    
T  35953928 ttccatttgcatcagctcaaatttccttct 35953957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 48441 - 48778
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  48441 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 48540  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  48541 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 48640  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || |||||||||||| | ||| |||    
T  48641 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattga 48740  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  48741 agcttaatcaacttcactttatcatcaccttcatgata 48778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 470
Target Start/End: Original strand, 48831 - 48907
Alignment:
Q  394 tcaaaatttcctccatcaacgccttgttgaatgaagaacactgctttgcaatccttcttctttaactccttatgtgc 470  Q
    ||||| |||||| ||||||  | ||||||||| |||||||  || |||||||| |||||||| || |||||||||||    
T  48831 tcaaagtttccttcatcaagactttgttgaatcaagaacagagccttgcaatctttcttcttcaattccttatgtgc 48907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 8319080 - 8319417
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  8319080 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 8319179  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  8319180 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 8319279  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || |||||||||||| | ||| |||    
T  8319280 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattga 8319379  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  8319380 agcttaatcaacttcactttatcatcaccttcatgata 8319417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 17881055 - 17881392
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  17881055 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 17881154  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  17881155 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 17881254  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||  | || |||||||||||| |  || |||    
T  17881255 cttcatctgattcacaagattgatgagtttagagatgtattcataaatcttatgatcatcttccatttgcaatagctcaaatttccttctcagtgattga 17881354  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  17881355 agcttaatcaacttcactttatcatcaccttcatgata 17881392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 278
Target Start/End: Original strand, 27571308 - 27571581
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  27571308 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcaactcctcaatcttcaatgtcttaacatctt 27571407  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| |||||||| ||||||  | || || ||| | ||||  || |||| ||||| ||||| |||||| || ||    
T  27571408 ttgattcctgaattgccaccacaatgaaatcaaatcttgaagatagggtcctcataatcttttcaactatctgttgatcagtgattgcttcactacaagc 27571507  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatca 278  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| |  || ||||||||||||||||    
T  27571508 cttcatctgattcacaagattgatgagtttagagatgtattcagaaatcttctattcatcttccatttgcatca 27571581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 39794976 - 39794639
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  39794976 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 39794877  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | ||||  || |||| ||||| ||| | |||||| || ||    
T  39794876 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttcaactatctgttgatcagtgatagcttcactacaagc 39794777  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || |||||||||||| | ||| |||    
T  39794776 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattga 39794677  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  39794676 agcttaatcaacttcactttatcatcaccttcatgata 39794639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 26312594 - 26312257
Alignment:
Q  5 gcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcct 104  Q
    ||||||||||||||||||||| | |||||||| || |  || |||||| | || || || ||||||||||  || ||||| ||||| || |  ||||| |    
T  26312594 gcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatgaactctgcagctcctcaatcttcaatgtcttaacatctt 26312495  T
Q  105 ttgattcttttacggccaccactataaaataaaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgc 204  Q
    ||||||| |  |  |||||||| || |||| ||| |||| ||||||  | || || ||| | | ||  || |||| ||||| ||| | |||||| || ||    
T  26312494 ttgattcctgaattgccaccacaatgaaatcaaaccttgaagatagggtcctcataatcttttaaactatctgttgatcagtgatagcttcactacaagc 26312395  T
Q  205 cttcatctgatttacaacattaatcaacttaaagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactga 304  Q
    |||||||||||| |||| ||| || |  ||| ||||||| |||  |||||| || || |||||||||||||||| || |||||||||||| | ||| ||     
T  26312394 cttcatctgattcacaagattgatgagtttagagatgtactcagaaatcttctgatcatcttccatttgcatcagctcaaatttccttctcagagattgg 26312295  T
Q  305 agttttatctccttcaccttctcatctccttcatgata 342  Q
    || || |||  |||||| || ||||| |||||||||||    
T  26312294 agcttaatcaacttcactttatcatcaccttcatgata 26312257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 136 - 360
Target Start/End: Original strand, 54124 - 54347
Alignment:
Q  136 aaatcttggagatagtattcttatgatcgtctcaataatttgttaatcagagattgtttcactgcatgccttcatctgatttacaacattaatcaactta 235  Q
    ||||||||| |||||  |||| || ||| | |||| |||||||| |||| | |||||  |||| ||||||||| ||||||| ||||  || |||| |||     
T  54124 aaatcttggtgatagggttctcattatcttttcaacaatttgttgatcataaattgtcccactccatgccttcctctgattcacaatgttgatca-cttt 54222  T
Q  236 aagatgtaatcaagaatcttttgctcctcttccatttgcatcaacttaaatttccttcttaaagactgaagttttatctccttcaccttctcatctcctt 335  Q
     |||||||||||| |||||| || |  ||||||||||  ||||  | ||||||||| || ||||| ||||| || |||| ||||||||| ||||| ||||    
T  54223 gagatgtaatcaacaatcttatgatattcttccatttatatcagttgaaatttcctcctcaaagattgaagcttgatctgcttcaccttttcatcacctt 54322  T
Q  336 catgatatttctctagaatatccaa 360  Q
    |||  || ||||| ||||| |||||    
T  54323 cattgtagttctcaagaatgtccaa 54347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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