View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1319_high_6 (Length: 450)
Name: NF1319_high_6
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 23 - 448
Target Start/End: Original strand, 37791976 - 37792401
Alignment:
| Q |
23 |
atcatcaacatatttggctggggtggcttatattcaacatctggttgtggaccgagagaaacaggtcttgtagggggaactgccggtgaagccatcggcc |
122 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37791976 |
atcatcaacatatttggctggggtgacttatattcaacatctggttgtggaccgagagaaacaggtcttgtagggggaactgccggtgaagccatcggcc |
37792075 |
T |
|
| Q |
123 |
ccatattgctgagacctacagacattttaacattgacgggtcctccacccagtccagtagatacgccgtgaggggttaatgactggttagctattggcga |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
37792076 |
ccatattgctgagacctacagacattttaacattgacgggtcctccacccagtccagtagatacgccgtgaggggttaatggctggttagctattggtga |
37792175 |
T |
|
| Q |
223 |
cggcgatataccagacaaaggttgaggcgttgaagagactgatgtctggagttgtccagttggtgttggttggcttaaagaaactggaaatgaaagtgaa |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37792176 |
cggcgatataccagacaaaggttgaggcgttgaagagactgatgtctggagttgtccagttggtgttggttggcttaaagaaactggaaatgaaagtgaa |
37792275 |
T |
|
| Q |
323 |
gcatttgttggtgctgacaaattctgtgcacgtattacagaaggatttcttggtggcccaacttgaccaaaaggacttgtttgaggccattgtgagtgct |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37792276 |
gcatttgttggtgctgacaaattctgtgcacgtattacagaaggatttcttggtggcccaacttgaccaaaaggatttgtttgaggccattgtgagtgct |
37792375 |
T |
|
| Q |
423 |
gtaagatttgtgtctgtggtgctgct |
448 |
Q |
| |
|
|||||||||||||| |||||| |||| |
|
|
| T |
37792376 |
gtaagatttgtgtcggtggtggtgct |
37792401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University