View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1319_high_7 (Length: 445)
Name: NF1319_high_7
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 30 - 434
Target Start/End: Complemental strand, 10561622 - 10561218
Alignment:
| Q |
30 |
ctactaagaaacatatatgatgtgttctgaattctcatctcactgcttagttgtaatgttgtgcagtgtaattgttcaagtgctttgcagttacagcacc |
129 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10561622 |
ctactaagaaccatatgtgatatgttctgaattctcatctcactgcttagttgtaatgttgtgcagtgtaattgttcaagtgctttgcagttacagcacc |
10561523 |
T |
|
| Q |
130 |
ttgcctctttacactcttgtcactcaggttgggataatctatcttatcgacgtgcatcgatcaaaacgtataagctttgataaaaactctaacatgtttt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10561522 |
ttgcctctttacactcttgtcactcaggttgggataatctatcttatcgacatgcatcgattaaaacgtataagctttgataaaaactctaacatgtttt |
10561423 |
T |
|
| Q |
230 |
tgttctttggtttaatctccactgaattggagcagatgggtagtaggtgtaaacttgacaaggttgatgataaggcagaaatggaatcgtctcccttgtt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10561422 |
tgttctttggtttaatctccactgaattggagcagatgggtagtaggggtaaacttgacaaggttgatgataaggcggaaatggaatcgtctcccttgtt |
10561323 |
T |
|
| Q |
330 |
ccacagaatgaccaaagaatcaaatcaacattctcaaattaatgaacaagcgattatcatgatggaagatcatgcaatatcatctacaattgaacttcac |
429 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10561322 |
ccacagaatgaccaaagaatcaaaccaacattctcaaattggtgaacaagcgattatcatgatggaagatcatgcaatatcatctacaattgaacttcac |
10561223 |
T |
|
| Q |
430 |
cctat |
434 |
Q |
| |
|
||||| |
|
|
| T |
10561222 |
cctat |
10561218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University