View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_high_9 (Length: 441)
Name: NF1319_high_9
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 29 - 428
Target Start/End: Original strand, 54442311 - 54442721
Alignment:
| Q |
29 |
atattttcatgcaaaacttagaggcgcaatacatcacagtagattcctggtttttgaaacatccgataggcaaagaacaggtaatcctgtgaagaattaa |
128 |
Q |
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| T |
54442311 |
atattttcatgcaaaacttagaggcgcaatacatcacagtagattcctggtttttgaaacatctgataggcaaagaacaggtaatcctgtgaagaattaa |
54442410 |
T |
|
| Q |
129 |
gttcaatcaatcatcaatcaataaatacgtatataaacttattttgagtaagcttattctgagtggttaatcaattaacaagcaagccatcaacatcact |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54442411 |
gttcaatcaatcatcaatcaataaatacgtatataaacttattttgactaagcttattctgagtggttaatcaattaacaagcaagccatcaacatcact |
54442510 |
T |
|
| Q |
229 |
tcatcgcccctaatctctatcataaactagat----------ccgaacctgccctagaattaacggaaaa-aatgatttaactaagtgcggatgtggaaa |
317 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
54442511 |
tcatcgtccctaatctctatcataaactagatccgaacccggccgaacctgccctagaattaacggaaaaggacgatttaactaagtgcggatgtggaaa |
54442610 |
T |
|
| Q |
318 |
aaacatggattttaaaaagtagagggcaggcgggcagggtcggggaaggtggcacctgccctacaagttgtgattgattttagttaaacggtacaattta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54442611 |
aaacatggattttaaaaagtagagggcaggcgggcagggtcggggaaggtggcacctgccctacaagttgtgattgattttagttaaatggtacaattta |
54442710 |
T |
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| Q |
418 |
attattagtct |
428 |
Q |
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| T |
54442711 |
attattagtct |
54442721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 3240969 - 3240925
Alignment:
| Q |
382 |
aagttgtgattgattttagttaaacggtacaatttaattattagt |
426 |
Q |
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| T |
3240969 |
aagttgtgattgattttagttaatcggtacaatttaattattagt |
3240925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 32614248 - 32614211
Alignment:
| Q |
382 |
aagttgtgattgattttagttaaacggtacaatttaat |
419 |
Q |
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| T |
32614248 |
aagttgtgattgattttagttaaatggttcaatttaat |
32614211 |
T |
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