View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1319_low_1 (Length: 691)
Name: NF1319_low_1
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 29 - 600
Target Start/End: Complemental strand, 18664831 - 18664260
Alignment:
| Q |
29 |
acatctgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttcaggaacatg |
128 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18664831 |
acatttgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttcaggaacatg |
18664732 |
T |
|
| Q |
129 |
aacatgactgagcgcaaattgattgaggaacttgatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18664731 |
aacatgactgagcgcaaattgattgaggaacttgatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttc |
18664632 |
T |
|
| Q |
229 |
atattcttgtagatttggatcgttgtttgcgattaatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttaca |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18664631 |
atattcttgtagatttggatcgttgtttgcgattaatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttaca |
18664532 |
T |
|
| Q |
329 |
acatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18664531 |
acatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatg |
18664432 |
T |
|
| Q |
429 |
actgagcgcgatttgactactatatatattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggt |
528 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18664431 |
actgagcgcgatttgactactatatgtattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggt |
18664332 |
T |
|
| Q |
529 |
caggactaaaacctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatattgttg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18664331 |
caggactaaaacctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatattgttg |
18664260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 170 - 429
Target Start/End: Complemental strand, 18664990 - 18664731
Alignment:
| Q |
170 |
ttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcttgtagatttggatcgttgtttgcgattaatgcaa |
269 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||| |||||| | ||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
18664990 |
ttgcaaggagggtgaagtgaagaaagcaattgctgttttgcaagagttagaaaagcttcatacttatgtggatttgtatctttgtttgcgattaatgcaa |
18664891 |
T |
|
| Q |
270 |
caatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcacctcttaaagtcagcacatgcaatggaatat |
369 |
Q |
| |
|
| ||||| ||| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||| | |||||| |
|
|
| T |
18664890 |
ctgtgtggaaaggctgagtttcttgaagaggcaaaagttgtacacatatatgttttacaacatttgtcacctctcacagttcgcacatgcattagaatat |
18664791 |
T |
|
| Q |
370 |
tggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatga |
429 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
18664790 |
tagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttcaggaacatga |
18664731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 29 - 600
Target Start/End: Original strand, 15078997 - 15079568
Alignment:
| Q |
29 |
acatctgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttcaggaacatg |
128 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15078997 |
acatttgtcacctctcacagtccgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttcaggaacatg |
15079096 |
T |
|
| Q |
129 |
aacatgactgagcgcaaattgattgaggaacttgatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15079097 |
aacatgactgagcgcaaattgattgaggaacttgatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttc |
15079196 |
T |
|
| Q |
229 |
atattcttgtagatttggatcgttgtttgcgattaatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttaca |
328 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15079197 |
atattcatgtagatttggatcgttgtttgagattaatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttaca |
15079296 |
T |
|
| Q |
329 |
acatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15079297 |
acatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatg |
15079396 |
T |
|
| Q |
429 |
actgagcgcgatttgactactatatatattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggt |
528 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15079397 |
aatgaacgcgatttgactactatatatattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggt |
15079496 |
T |
|
| Q |
529 |
caggactaaaacctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatattgttg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15079497 |
caggactaaaacctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatattgttg |
15079568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 170 - 429
Target Start/End: Original strand, 15078838 - 15079097
Alignment:
| Q |
170 |
ttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcttgtagatttggatcgttgtttgcgattaatgcaa |
269 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||| |||||| | ||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
15078838 |
ttgcaaggagggtgaagtgaagaaagcaattgctgttttgcaagagttagaaaagcttcatacttatgtggatttgtatctttgtttgcgattaatgcaa |
15078937 |
T |
|
| Q |
270 |
caatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcacctcttaaagtcagcacatgcaatggaatat |
369 |
Q |
| |
|
| ||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||| | |||||| |
|
|
| T |
15078938 |
ctgtgtggaaaggctgagtttcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcacctctcacagtccgcacatgcattagaatat |
15079037 |
T |
|
| Q |
370 |
tggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatga |
429 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
15079038 |
tagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttcaggaacatga |
15079097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 162 - 596
Target Start/End: Complemental strand, 7535247 - 7534813
Alignment:
| Q |
162 |
gatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcttgtagatttggatcgttgtttgcgat |
261 |
Q |
| |
|
||||||| ||||| ||| ||| ||||||| ||||| |||| ||||||||||||| |||||| || |||||| | | |||||| | |||||||||| || |
|
|
| T |
7535247 |
gatagtttttgcagggatggtaaagtgaatgaagcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaat |
7535148 |
T |
|
| Q |
262 |
taatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcacctcttaaagtcagcacatgcaa |
361 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||| ||||||||| ||||||| || |||||| ||| |
|
|
| T |
7535147 |
taatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagacaa |
7535048 |
T |
|
| Q |
362 |
tggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatgactgagcgcgatttgactactatatatattatg |
461 |
Q |
| |
|
| || ||||||||||||||||| ||||||||||| ||||||||||| || |||| ||||||| |||| ||||| ||||||||||||| ||| |||| |
|
|
| T |
7535047 |
tagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactacttggcatactatg |
7534948 |
T |
|
| Q |
462 |
ataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggtcaggactaaaacctgatggccaaatgtttattg |
561 |
Q |
| |
|
|||| ||| ||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7534947 |
ataatgcaactcgccaagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattg |
7534848 |
T |
|
| Q |
562 |
gggtttttggtgcatgtagtatgttgggagatatt |
596 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7534847 |
gagtttttggtgcatgtagtatgttgggagatatt |
7534813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 151 - 596
Target Start/End: Complemental strand, 7449720 - 7449275
Alignment:
| Q |
151 |
ttgaggaacttgatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcttgtagatttggatcg |
250 |
Q |
| |
|
|||||||||| ||||||| ||||| ||| ||| |||||||||||||| |||| ||||||| ||| |||||| ||||||||| ||| |||||| | || |
|
|
| T |
7449720 |
ttgaggaactagatagtttttgcagggatggtaaagtgaaggaagcagttgaaaatttgcaaaagttggaaaagcttcatattcatgtggatttgcagcg |
7449621 |
T |
|
| Q |
251 |
ttgtttgcgattaatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcacctcttaaagtc |
350 |
Q |
| |
|
|||||||| |||||||| ||||||||| | ||||||||||| ||||||| ||||||||||||| ||| ||| ||||||||| ||||||| || |
|
|
| T |
7449620 |
ttgtttgcaattaatgcgcatttgtgggaaggctaagtctcttgaggaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggtt |
7449521 |
T |
|
| Q |
351 |
agcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatgactgagcgcgatttgactacta |
450 |
Q |
| |
|
|||||| |||| || ||||||||||||||||| ||||||||||| ||||||||||| || |||| ||||||| |||| ||||| ||||||||||||| |
|
|
| T |
7449520 |
agcacagacaatagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactactt |
7449421 |
T |
|
| Q |
451 |
tatatattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggtcaggactaaaacctgatggcca |
550 |
Q |
| |
|
||| |||||||| ||| |||| |||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7449420 |
ggcatactatgataatgcaactcgtcaagaatggttttgcagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggcca |
7449321 |
T |
|
| Q |
551 |
aatgtttattggggtttttggtgcatgtagtatgttgggagatatt |
596 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7449320 |
aatgtttattggagtttttggtgcatgtagtatgttgggagatatt |
7449275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 405
Target Start/End: Original strand, 27578126 - 27578246
Alignment:
| Q |
285 |
aagtctcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttc |
384 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||||| ||| ||||| ||| |||||| ||| |||| ||||||||| ||| | ||||||||||||| |
|
|
| T |
27578126 |
aagtctcttgaagaggaaaaagtcgtacatagatatgctttgaaacatgtgttacctctcaaattcagaacatgcaatataatttgggagatgtatttta |
27578225 |
T |
|
| Q |
385 |
aatgtggttctgtagatgatg |
405 |
Q |
| |
|
| ||||||||||||| ||||| |
|
|
| T |
27578226 |
attgtggttctgtagttgatg |
27578246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 7449509 - 7449451
Alignment:
| Q |
62 |
tagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttca |
120 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
7449509 |
tagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttca |
7449451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 7535047 - 7534989
Alignment:
| Q |
62 |
tagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttca |
120 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
7535047 |
tagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttca |
7534989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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