View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_low_13 (Length: 442)
Name: NF1319_low_13
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 93 - 331
Target Start/End: Original strand, 26799028 - 26799266
Alignment:
| Q |
93 |
aatgaaaataatatgaaaagtgagatatataaccttacactatgcattattatatatataaggaacaaatatggttttttgcacttaggttttcacctgg |
192 |
Q |
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| T |
26799028 |
aatgaaaataatatgaaaagtgatatatataacctaacactgtgcattagtatttatataaggaacaaatatggttttttacacttaggttttcacctgg |
26799127 |
T |
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| Q |
193 |
acatatgtcctcaagggaaacttgtaattatctggatataacaccattagatttagggaaagtttaccctataactctacatctatacatgcaccctgca |
292 |
Q |
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| T |
26799128 |
acagatgtcctcaagggaaacttgtaattatctggatataacaccattagatttagggaaagtttaccctataactctacatccatacatgcaccctaca |
26799227 |
T |
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| Q |
293 |
aagcataaaaagttcccattttatccttatttgtgattt |
331 |
Q |
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| T |
26799228 |
aagcataaaaaattcccattttattcctatttgtgattt |
26799266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 358 - 439
Target Start/End: Original strand, 26799266 - 26799346
Alignment:
| Q |
358 |
ttttccagtgactgtgaccaaaattgtaaaccataactcatcgggaatgatttcctaattgtttttactttggctaaattga |
439 |
Q |
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| T |
26799266 |
ttttccagtgagtgtgaccaaaattgtaaaccataactcatcgggaatga-ttcataattgtttttactttggctaaattga |
26799346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 102
Target Start/End: Original strand, 26797283 - 26797313
Alignment:
| Q |
72 |
aaacagaattataacgactcgaatgaaaata |
102 |
Q |
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| T |
26797283 |
aaacagaattataacgactcgaatgaaaata |
26797313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 44515880 - 44515812
Alignment:
| Q |
7 |
cgaagatcctccaaaataaagtaaacacaaacaagagacggacacctataattctgctcaaacagaaac |
75 |
Q |
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| T |
44515880 |
cgaagatcccccaaaataaagtaaacacaaacaagagacagacgcctataattctgctcaaacagaaac |
44515812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 439
Target Start/End: Complemental strand, 44255638 - 44255576
Alignment:
| Q |
375 |
ccaaaattgtaaaccataactcatcgggaatgatttcctaattgtttttactttggctaaattga |
439 |
Q |
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| T |
44255638 |
ccaaaattgcaaaccataattcttcggaaatgatttcctaat--tttttacgttggctaaattga |
44255576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 40410254 - 40410206
Alignment:
| Q |
179 |
aggttttcacctggacatatgtcctcaagggaaacttgtaattatctgg |
227 |
Q |
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| T |
40410254 |
aggtcttcacctggacaaatgtcctcaagggacacttgtaataatctgg |
40410206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 1917550 - 1917495
Alignment:
| Q |
17 |
ccaaaataaagtaaacacaaacaagagacggacacctataattctgctcaaacaga |
72 |
Q |
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| T |
1917550 |
ccaaactaaagcaaacacaaacaagagacggacacctgtacttctactcatacaga |
1917495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 38433140 - 38433096
Alignment:
| Q |
349 |
atgtacaagttttccagtgactgtgaccaaaattgtaaaccataa |
393 |
Q |
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| T |
38433140 |
atgtacaagttttccgatgagtgtgatcaaaattgtaaaccataa |
38433096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 29121015 - 29121064
Alignment:
| Q |
23 |
taaagtaaacacaaacaagagacggacacctataattctgctcaaacaga |
72 |
Q |
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| T |
29121015 |
taaagcaaacacaaacaaaagaaggacacctgtacttctgctcaaacaga |
29121064 |
T |
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