View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_low_16 (Length: 418)
Name: NF1319_low_16
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 42 - 388
Target Start/End: Original strand, 43027297 - 43027641
Alignment:
| Q |
42 |
cacaacagatacagaacaaaattgagattcgaacacaacactaaaatcaaattttaccgtatgcaatcatggtcccaaaattgagatacagaacaagatc |
141 |
Q |
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| T |
43027297 |
cacaacagatacagaacaaaattgagattcgaacacaacactaaaatcaaattttaccgtatgcaatcatggtcccaaaattgagatacagaacaagatc |
43027396 |
T |
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| Q |
142 |
gatcatacacgacagaacacaa--cactaaaatcaaattttaccgtatgcaatcatggtcccaaaattgagatacagaacaagttcatacacgacagaag |
239 |
Q |
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| T |
43027397 |
----atacacgacagaacacaaaacactaaaatcaaattttaccgtatgcaatcatggtcccaaaattgagatacagaacaagttcatacacgacagaag |
43027492 |
T |
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| Q |
240 |
tttcggtcactatgttccttagcattcaactaacttaattccacaactaattataatgcgggaccaaattaaaccagagttgcaaaccctgccagaaatc |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43027493 |
tttcggtcactatgttccttagcattcaactaacttaattccacaactaattataatgcgggaccaaattaaaccagagttgcaaacccagccagaaatc |
43027592 |
T |
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| Q |
340 |
tgtcaaataaccaaagcttcactgaactgtcttcttctcactgtacccc |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43027593 |
tgtcaaataaccaaagcttcactgaactgtcttcttctcactgtacccc |
43027641 |
T |
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