View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_low_19 (Length: 391)
Name: NF1319_low_19
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 29 - 300
Target Start/End: Complemental strand, 18664531 - 18664260
Alignment:
| Q |
29 |
acatctgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatg |
128 |
Q |
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|||| |||||||||| | ||| ||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664531 |
acatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatg |
18664432 |
T |
|
| Q |
129 |
actgagcgcgatttgactactatatatattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggt |
228 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664431 |
actgagcgcgatttgactactatatgtattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggt |
18664332 |
T |
|
| Q |
229 |
caggactaaaacctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatattgttg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664331 |
caggactaaaacctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatattgttg |
18664260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 18664831 - 18664731
Alignment:
| Q |
29 |
acatctgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatg |
128 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
18664831 |
acatttgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttcaggaacatg |
18664732 |
T |
|
| Q |
129 |
a |
129 |
Q |
| |
|
| |
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|
| T |
18664731 |
a |
18664731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 29 - 300
Target Start/End: Original strand, 15079297 - 15079568
Alignment:
| Q |
29 |
acatctgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatg |
128 |
Q |
| |
|
|||| |||||||||| | ||| ||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079297 |
acatttgtcacctcttaaagtcagcacatgcaatggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatg |
15079396 |
T |
|
| Q |
129 |
actgagcgcgatttgactactatatatattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggt |
228 |
Q |
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| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079397 |
aatgaacgcgatttgactactatatatattatgataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggt |
15079496 |
T |
|
| Q |
229 |
caggactaaaacctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatattgttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15079497 |
caggactaaaacctgatggccaaatgtttattggggtttttggtgcatgtagtatgttgggagatattgttg |
15079568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 15078997 - 15079097
Alignment:
| Q |
29 |
acatctgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatg |
128 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
15078997 |
acatttgtcacctctcacagtccgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttcaggaacatg |
15079096 |
T |
|
| Q |
129 |
a |
129 |
Q |
| |
|
| |
|
|
| T |
15079097 |
a |
15079097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 62 - 296
Target Start/End: Complemental strand, 7535047 - 7534813
Alignment:
| Q |
62 |
tagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatgactgagcgcgatttgactactatatatattatg |
161 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||| ||||||||||| || |||| ||||||| |||| ||||| ||||||||||||| ||| |||| |
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|
| T |
7535047 |
tagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactacttggcatactatg |
7534948 |
T |
|
| Q |
162 |
ataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggtcaggactaaaacctgatggccaaatgtttattg |
261 |
Q |
| |
|
|||| ||| ||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
7534947 |
ataatgcaactcgccaagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattg |
7534848 |
T |
|
| Q |
262 |
gggtttttggtgcatgtagtatgttgggagatatt |
296 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
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| T |
7534847 |
gagtttttggtgcatgtagtatgttgggagatatt |
7534813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 62 - 296
Target Start/End: Complemental strand, 7449509 - 7449275
Alignment:
| Q |
62 |
tagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatgactgagcgcgatttgactactatatatattatg |
161 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||| ||||||||||| || |||| ||||||| |||| ||||| ||||||||||||| ||| |||| |
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| T |
7449509 |
tagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactacttggcatactatg |
7449410 |
T |
|
| Q |
162 |
ataaagcagctcgctaagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggtcaggactaaaacctgatggccaaatgtttattg |
261 |
Q |
| |
|
|||| ||| |||| |||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
7449409 |
ataatgcaactcgtcaagaatggttttgcagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattg |
7449310 |
T |
|
| Q |
262 |
gggtttttggtgcatgtagtatgttgggagatatt |
296 |
Q |
| |
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| ||||||||||||||||||||||||||||||||| |
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|
| T |
7449309 |
gagtttttggtgcatgtagtatgttgggagatatt |
7449275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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