View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_low_27 (Length: 364)
Name: NF1319_low_27
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_27 |
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| [»] scaffold0446 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 56049114 - 56049432
Alignment:
| Q |
17 |
atgcacattaaggtgggctatcaaatatttacttttgatggatatttagctacaaagtgtcggttcccctagagttcacttggctgaaaattcgctctcc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
56049114 |
atgcacattaaggtgggctatcaaatatttacttttgatggatatttagctacaaagtgtcggttcccctagagtccacttggctgaaaattcgctctcc |
56049213 |
T |
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| Q |
117 |
aaccttcatgaactgggttaaatactggcacgcggatggatatttagctacaaagtgaagcaaaagtaccaagacaatgtggcgtggtgctaacagtggg |
216 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56049214 |
aaccttcatgaactgggttaaatactggcacaccgatggatatttagctacaaagtgaagcaaaagtaccaagacaatgtggcgtggtgctaacagtggg |
56049313 |
T |
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| Q |
217 |
ttagtcaaaggcactgctaagatgaagctagaagtacaagggatcagctcagctcctctcaggcacttcatgagtacctttctggattacaagggaaaca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56049314 |
ttagtcaaaggcactgctaagatgaagctagaagtacaaggtatcagctcagctcctctcaggcacttcatgagtacctttctggattacaagggaaaca |
56049413 |
T |
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| Q |
317 |
ataatttaaaagacctgtc |
335 |
Q |
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||||||||||||||||||| |
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| T |
56049414 |
ataatttaaaagacctgtc |
56049432 |
T |
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Target: scaffold0446 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 14434 - 14479
Alignment:
| Q |
17 |
atgcacattaaggtgggctatcaaatatttacttttgatggatatt |
62 |
Q |
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| T |
14434 |
atgcacattaaggtgggctatcaaatatttacttttgatggatatt |
14479 |
T |
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