View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_low_28 (Length: 363)
Name: NF1319_low_28
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_28 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 30 - 363
Target Start/End: Original strand, 1034022 - 1034349
Alignment:
| Q |
30 |
tctttagttttattccatttgggaatatgtcatcttccaccacctaaagaaaaatcataatgcattttgaagttcaatcaacaattgatagtgaattcaa |
129 |
Q |
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| T |
1034022 |
tctttaattttattccatttgggaatatgtcatcttccaccacctaaagaaaaatcataatgcattttgaagttcaatcaacaatt---agtgaattcaa |
1034118 |
T |
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| Q |
130 |
ttattctttctctattagatcatattaagcgttcttcttataatattgacttgtcttgtctcaaattatttatcattttagaatacttaaagagaggatg |
229 |
Q |
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||||||||||| |||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1034119 |
ttattctttctatatttgatcatattaagtgttctttttataatattgacttgtattgtctcaaattatttatcattttagaatacttaaagagagaatg |
1034218 |
T |
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| Q |
230 |
aatttctcttttccaatctatatatttcttttctgaaaaatg-taatgagtgctttgtgacactctttaagaaccttaaatagtaaatttttataatgtt |
328 |
Q |
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| T |
1034219 |
aatttctcttttccaatc----tatttcttttctgaaaaatgctaatgagtgctatgtgacactctttaaaaaccttaaatagtaaatttttataatgtt |
1034314 |
T |
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| Q |
329 |
ggtacattcagtaactattgtgactctctgcgcct |
363 |
Q |
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| T |
1034315 |
ggtacattcagtaactattgtgactctccgcgcct |
1034349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 13896030 - 13896220
Alignment:
| Q |
30 |
tctttagttttattccatttgggaatatgtcatcttccaccacctaaagaaaaatcataatgcattttgaagttcaatcaacaattgatagtgaattcaa |
129 |
Q |
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| T |
13896030 |
tctttagttttattccatttgggaatgtgtcatcttccaccacctaaagaaaaatcataatgcattatgaagttcaatcaacaattgatagtgaattcaa |
13896129 |
T |
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| Q |
130 |
ttattctttctctattagatcatattaagcgttcttcttataatattgacttgtcttgtctcaaattatttatcattttagaatacttaaa |
220 |
Q |
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| T |
13896130 |
ttattctttatctatttgatcatattaagtgttctttttataatattgacttatcttgtctcaaattatttatctttttagaatacttaaa |
13896220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 3685018 - 3685055
Alignment:
| Q |
287 |
gacactctttaagaaccttaaatagtaaatttttataa |
324 |
Q |
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| T |
3685018 |
gacactatttaagaaccttaaatggtaaatttttataa |
3685055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Original strand, 43238133 - 43238166
Alignment:
| Q |
289 |
cactctttaagaaccttaaatagtaaatttttat |
322 |
Q |
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| T |
43238133 |
cactctttaagaactttaaatagtaaatttttat |
43238166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 31702730 - 31702767
Alignment:
| Q |
287 |
gacactctttaagaaccttaaatagtaaatttttataa |
324 |
Q |
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| T |
31702730 |
gacactctttaagatccttaaatagtaactttttataa |
31702767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Original strand, 47040671 - 47040704
Alignment:
| Q |
289 |
cactctttaagaaccttaaatagtaaatttttat |
322 |
Q |
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| T |
47040671 |
cactctttaaggaccttaaatagtaaatttttat |
47040704 |
T |
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