View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_low_37 (Length: 329)
Name: NF1319_low_37
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_37 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 24057997 - 24058308
Alignment:
| Q |
9 |
accacagagataagggtttctggtgactttgctgaaccatattacaaggacgttttgttcaatgccatagaggagactctcacagtaagtgttggtcctg |
108 |
Q |
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| T |
24057997 |
accacagagataagggtttctggtgactttgctgaaccatattacaaggacgttttgttcaatgccacagaggagactctcacagtaagtgttggtcctt |
24058096 |
T |
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| Q |
109 |
caacaatgtctactatagaaaatgcaaccttgaatgggatagagataatgaagttcattaacagagttgacagtgttctaacaaaatcttcagaaagaat |
208 |
Q |
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| T |
24058097 |
caacaatgtctactatagaaaatgcaaccttgaatgggatagagataatgaagttcattaacagagttgacagtgttctaacaaaatcttcagaaagaat |
24058196 |
T |
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| Q |
209 |
tcnnnnnnncaagaaattaaaattagtcattgtaattggatgcggtgtttctgttttaacatttctagcatttcttggactatcatttcgttatttaaaa |
308 |
Q |
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| T |
24058197 |
tcaaacaaacaagaaattaaaattagtcattgtaattggatgtggtgtatttgttt---------tagcatttcttggactatcatttcgttatctaaaa |
24058287 |
T |
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| Q |
309 |
tcctgcaggtccaagaaaaat |
329 |
Q |
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| T |
24058288 |
tcctgcaggtccaagaaaaat |
24058308 |
T |
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